Detail information of Zm00001d039612_circ_g.7


General Information
CircRNA Name Zm00001d039612_circ_g.7
ID in PlantcircBase zma_circ_001314
Alias circ1678
Organism Zea mays
Position chr3: 9057558-9061664  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d039612
Parent gene annotation embryo defective 2410
Parent gene strand -
Alternative splicing Zm00001d039612_circ_g.1 Zm00001d039612_circ_g.2 Zm00001d039612_circ_g.3 Zm00001d039612_circ_g.4 Zm00001d039612_circ_g.5 Zm00001d039612_circ_g.6 Zm00001d039612_circ_g.8 Zm00001d039612_circ_g.9 Zm00001d039612_circ_g.10 Zm00001d039612_circ_g.11
Support reads 29
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered Zm00001d039612_T025:4
Zm00001d039612_T019:4
Zm00001d039612_T023:4
Zm00001d039612_T016:4
Zm00001d039612_T001:4
Zm00001d039612_T004:4
Zm00001d039612_T015:4
Zm00001d039612_T031:1
Zm00001d039612_T029:1
Zm00001d039612_T032:1
Zm00001d039612_T011:4
Zm00001d039612_T002:4
Zm00001d039612_T028:4
Zm00001d039612_T007:4
Zm00001d039612_T030:1
Zm00001d039612_T014:4
Zm00001d039612_T021:6
Zm00001d039612_T027:4
Zm00001d039612_T009:4
Zm00001d039612_T013:4
Zm00001d039612_T033:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTATATCAAGTGCCTCACCAAGCACGCCACTAAATTTGGGACGGATTATTGACAGCAAACCATG
GCCTCTTCTTTTCTGAAAATTAAGCTGAAGTTCTGCccatggtatccccattgccacctccact
ggcatccagagagccacgccaatagcctcttagttcagctaagccaggaaatgctatatcttcc
attgtgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGGTATCCCCATTGCCACCTCCACTGGCATCCAGAGAGCCACGCCAATAGCCTCTTAGTTC
AGCTAAGCCAGGAAATGCTATATCTTCCATTGTGTCATCATCCAACCAATCATGATAAATTTCT
AATGCCTGGAGCAAGTAACAAGGTAAAGTTTAACATAAATAATCATGTCAATATGAGACCATAA
CCATAGCATTAGACTAGATGTCAAAGTATCAAACCATATGCCAATGGATCTACTTGACAACAAC
ACTAGCTTTAGTACAATACCTTTAGCTGATCATTAAGACTTTCAGCATTGAACCCAACAGAATG
CAGACATTGCATAAAAAGTTCCTGAAAACAAAAGGAGGGTTATATGGCACTCTGCCCTCTAATA
ATAGACATAAATACCAACATATATTTTATCCAACAGTAGAAAGGCATATTTGAAGGACCAAATG
TGTACCTTTGATCTCGAACGGATAACTGGGTCTGTACTCCGTGAAAGAAGCCTTGCTAAAGGAA
GCATTTCAGCTACTTCAGCACCAGGAACCTCTAGTCTCATCCTCCACCTGCCCATCGAAGACAT
TATGCTACCAAGATGCCCTCCCATTGCTTTCTCTATGAACCCATTACTCTGACTTTCCACAGGA
AATCTATCACGCGTTCCAGGAAAAACATACTCCCCTTGAACCTCATATTTGCTATTAGCTTGCT
CCAGGATAGATTTTTCCATAGTAATCTGCGTTTGATATTAAAGAAAAAGGATAGTGAGGGAGAA
AGAGAGGGTTCCAAGATACCAAGGTTTTAAAGTCGTCCGAGCTAGTCCGAGCTCGATTAGGGTC
TCCGACTCGAGTAGAGTGACTAGATAGCGATTAGTCGTCCAAGTCGCCGACTAATCGCGATTAG
TCGTCCAACTAGGGGTTATGGTCGACTAGTTATGCCTGTTTTGGGCCACTAATCCGACCTTTAT
TATGTGAGTCGGCCCACCATCTGTACACAACACAAACGTTGTTTTGCCCTATGCCCCTGCTTGT
ACCAATACGGTACGCACTGTTGCGCGTGTGCTCTTACCTAGCTCAGCCACCCCTTCTCTAGCGT
CGCCGCCCCTTTACCCATCGTCGCCACTCTCCTCTCCTGCCGCCCTGTGGTGCTTTGGTGGCCC
TCTGCTCAAGCAGCAGTTGCGCTCCCTCCATCGCGTGTCGGTTGTAGTCTGCAGAGGCCCCCTT
CCAGCGTGTTCCCGTCCTCCTCTGTTGTCTGTTTAGAATTCAGAGATTGAGATGAGTACCTCTT
CAGACGGTAATTGCTCTGATATTTTGGTTGTTCAATGTTCTATGTTCACTAACTGAGCAGTATT
GTGCCCGCCTTGGCCTCCTCTTGAGTTGTGCTTCATTTGATTGTTGTGCCACTACATATGAGAA
TAGGAGGCGACGTAATAATGTTGAAATCATCTTCCCAGAATCTGTGTTGCCCCAGCCCTAGAAC
GATGGCAGTGGCACTGGTACAGTTCATGCAGTCATGCAGTCCAACTAGGCAGCTACAGATATAT
ATATTCATATATATTGATATATACACACACACATATTGTCATGTTATAGGTGGACGACTATAGG
ACGACTAGGAGTCGACCAGGCTCGACTAATCGAGCAAATCGGCGACTAATCGCGATTAGTCACC
TTATCGGTGCTTAGGCGACTAGAGTCGACTAACCGACTTTAAAACTTTGCAAGATACTAAGATA
GCAATTAAAAGTAAGACAAAAACCTTGCTAGAAATGGATGAATAATGATAGGAAAAACCTATGG
GTGCATGATGCATTCACACCATACACCAATTAATTTGTGCTAACAACTGCAAATTAGTATCACT
CCTAGAGATCAAAAGCAGAGTAAAATTGATGATTGCTGAGGGTATATACGTTTAAAGAAGAGTA
TGGTCAGAGATTTAGAGCATAATAAGTGACTTGTTTCTACAGTGTGAGCATGTCCCCGATTCTT
TGGCTTAGTGAAGGTGATGCCAACATAGAACAGTGGGTGCCTTGCTGCCTGTAGAAAAAAAGGC
GGGCATGGCTGGGTGCCTGGGTCGTGAGGCGGCCTCTCCCTGTTGCGTGCCCTTGCACCTAGTG
ATTAGGTCATGTCGTGGTCAGTTTATCTTTTTTCACAGGCACAAATGTATATTGAGAACCAAAA
TGCTGTGAGTGTTTGTACTTTGGGGTTTCTATTCCTCTCATCATACAACGATACACAGCTCTCC
TATGGTTCCAGAAATTTTGTTTCTACAGTGTGCATATCAGTATACACTTCCAAGGATGTGTTAC
TAATTATTAGTTATTTTGTATTCCAGAACTCCACTGTATAGATCAATCTAAGTTCCTAGCAGAA
ATATCATCGCTTCTATAAAACAGCATGCCTCAAAAGATGGGTAGAGAGGTTTGCAGAGAGGCTT
CCAAATTGGAAAGCACACCTCCTTAACCTTGCTGCAGTGCTGCTGGTAGGACAGCTCTTGTGTG
TTTTGTTCTTTCAGCAATCCCCATCTACCTTCTCATTGCAATGAATACTCCCAAGTGGGTGATA
AAAGAAACTGATAAAATTAGAAGGGGGTTTATTTGGAAAGGAAGGAAGCTGGAGGCAATTGTCT
GGTTTCTTGGGAAACAGTTACAAAGTCTATCTCTCTTGGGGGTCTTGGGATCCCTAACCTGCAG
TTTAAGAGCTGCGCACTGCAAGCATAGTGGTTATGGCTGGAAAAAACTGACCCAAATAGACCAT
GGCAGGGTCTTAACATTCCTGTGCAGCAATAGGTCAAAGACTTACTTGCAAAATCTGTGATATC
TATTATTGGGAATGGGTCAGCACGCTGTTCTGGACTGACAATTGGTTGCATGGGGCCGCAATCA
GGGACATTGCACCAGAAGTAGCTGCCAAGGTGGGCAAAAGAGCTCTGTCCTCTACAACCGTAGC
TCAGGCCCTTGATAATTTCCGCTGGGTCAGTGATATTAGAGCTCCTCTTTCTCTGTTGGGCCTT
CAACAATATTTGCTGCTTTGGGATTCCTTGAGGGAGGTTCATTTATCACAGGACCCAGATCAAC
ATAGATGGAGACGTTATTTCAGGAGTTTTCTCTTCTAAATCATGTTATCAAAGCTTGTTTGCTG
GTTCAACTCCTTTTCAACCGTGGAAAAGACTTTGGAAAACCTGCGCTCCACCAAAATGCAAATT
CTTTCTTTGGTTGGCTATGAAGAATAGATGTTGGACTGCTCACAGATTAGAAAAGAGAGATCTT
CCTCACCCGGTGGTGTACCCCTTATGCGACCAAGAGCAAGAAACAATCCAACACCTCCTAATCT
CCTGCATCTTCGCTCGTCAGTTCTGGCACATCTTGTTATCCCCTTTTGGTTTGGGTCATCTCAC
GCCAGTTGTTGATGCTCCTTCCTTCACAGAGTGGTGGAAACGGGTGGAGTGTCATGTGCCCAAA
AGCACAAGAAAGGGGTTTAACAGTGTCATCATCTTAGGGTGGGTGTATTTGGCTTCATCGTAAT
AACTAATAAGGTGGTCTTCGATGGGGATTCCCCTTCGCTGAGAAGGATTCAGGGCCTTGCCGCC
TTGGATCTCGCTAGGGCTTTGAATGTGGCCGGTCCTTAGCCATCTAGACCCTTGGTCTTGTTCT
GTTTTTTTTTGTTGTTTTCTTTTTATTTTTGTTCTTTTGGCAGGAGCTCTGCCTTGTAAAACCC
TTTGGGTTTGTCTCCTTCCCTTTTAATATAAAGATGCGCAGTTCTCCTGCGCGTTCGACGAAAA
AAGAGAAGAATTGTTAATCCTGGTCTCAGAACTGAAATAAGAATGTGTCCCACATGGCCTCATT
CTATATACTCGTGAAGACTCAGGCAGCGACAGGCAAGGCACGACAGGTGGCTGAGATGGGTGCG
TGACGAGCGGACAAGCCAGATGGGCCCATGGGATCGAGACAGCTCAGGAAACAAGGAAAATTTC
GAAAAGAAAAACTTACAACATCACCGCTCCATCGAGCAGCTATATCAAGTGCCTCACCAAGCAC
GCCACTAAATTTGGGACGGATTATTGACAGCAAACCATGGCCTCTTCTTTTCTGAAAATTAAGC
TGAAGTTCTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.003733463
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b