Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d039612_circ_g.7 |
ID in PlantcircBase | zma_circ_001314 |
Alias | circ1678 |
Organism | Zea mays |
Position | chr3: 9057558-9061664 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d039612 |
Parent gene annotation |
embryo defective 2410 |
Parent gene strand | - |
Alternative splicing | Zm00001d039612_circ_g.1 Zm00001d039612_circ_g.2 Zm00001d039612_circ_g.3 Zm00001d039612_circ_g.4 Zm00001d039612_circ_g.5 Zm00001d039612_circ_g.6 Zm00001d039612_circ_g.8 Zm00001d039612_circ_g.9 Zm00001d039612_circ_g.10 Zm00001d039612_circ_g.11 |
Support reads | 29 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-CA |
Number of exons covered | Zm00001d039612_T025:4 Zm00001d039612_T019:4 Zm00001d039612_T023:4 Zm00001d039612_T016:4 Zm00001d039612_T001:4 Zm00001d039612_T004:4 Zm00001d039612_T015:4 Zm00001d039612_T031:1 Zm00001d039612_T029:1 Zm00001d039612_T032:1 Zm00001d039612_T011:4 Zm00001d039612_T002:4 Zm00001d039612_T028:4 Zm00001d039612_T007:4 Zm00001d039612_T030:1 Zm00001d039612_T014:4 Zm00001d039612_T021:6 Zm00001d039612_T027:4 Zm00001d039612_T009:4 Zm00001d039612_T013:4 Zm00001d039612_T033:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.003733463 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |