Detail information of Os02g0523500_circ_g.7


General Information
CircRNA Name Os02g0523500_circ_g.7
ID in PlantcircBase osa_circ_014840
Alias NA
Organism Oryza sativa
Position chr2: 19101434-19103995  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0523500
Parent gene annotation Similar to 110 kDa 4SNc-Tudor domain protein (Fragment). (Os02t0
523500-01);Similar to RNA binding protein Rp120. (Os02t0523500-0
2)
Parent gene strand -
Alternative splicing Os02g0523500_circ_g.5 Os02g0523500_circ_g.6 Os02g0523500_circ_g.8 Os02g0523500_circ_g.9 Os02g0523500_circ_g.10 Os02g0523500_circ_g.11 Os02g0523500_circ_g.12 Os02g0523500_circ_g.13 Os02g0523500_circ_g.14 Os02g0523500_circ_g.15 Os02g0523500_circ_g.16
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0523500-02:1
Os02t0523500-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGATCTAAAATTCACATGGAGTACCTTTCCTATGCAGAGTTTCCTTAGAAACTCCCTGCTTTC
CCAAGCAAATGGTTCATCCACTCCACCACGGCGAGCctccacatctcgctgtagaattctcctc
ctcatcaaagcaatagcttcgttcgagtagggctcatctttaccagggcatctaacaccagaga
aagagaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACATCTCGCTGTAGAATTCTCCTCCTCATCAAAGCAATAGCTTCGTTCGAGTAGGGCTCA
TCTTTACCAGGGCATCTAACACCAGAGAAAGAGAAGGCAATGCTGCAAGTCTCCTTAGGAATTG
TTAGTTTGAAACGGTGGCCACTGAAGACATATTCAACAATTGCGGAATGTCTTCTGTTCCGCTG
TAAGAAAGGAAGGAAGTCTCTGGCCTTCTTTGCTGAAACCTGAGCGCATAGGAACTACGAGTTA
ATAAAGGTGCCAAAGGAAAAGTAAAAGTAAAAGAACAAGCAAGAGTGCCAAACCGTTGTCAAGT
CTGTTATGTGCATGACAGGTGATTCTTTTGCAGAATGAACTCCTTTCTTTGCTTTCTCAGCTCG
TGATTCAGCCGCCAACAGCAGGTCAAAATAGTGTGACCTTTCTTCGTAGTCCCGATGTTTAGAT
GTTCTAGCAAAGCCCCTTGAGAGCAGAGTCTCAGCAATATTGATACCAGGTTGGTTGCCTGAGC
TTGGAATGGAAGAAACATCATCACCATCAGCCTGCGAAGGTGAACCAAGAAAAACCGACCCATA
ATCCAAAACCCTGGCATCAGCTGTGTTTGTTGTGGGCTGTCCATCCACAGTGCTGATCCTTCTA
GAGTATTCCATCTCAACAGTCACCTGGAAATAGGAAGGAGAAAAAATCAATAAATTTTCAACAA
AGGTAACAACTTGTTATGGAACTTCTGATGGAATATCTCAAAACCTATGTACATACTTGCTTGC
CAATCAACCTTGTGCGCAAGAATTCCTTGGCTTCACGAGCAAAATTATCAGGCTTCTCATCTCT
ACGAGGGTTGCCCATTTTAGGAGCTCTAATGCTTGAAAGATTAACCCGGCGTTCTGCAGAAGGA
CTTCCGTAAGGAGCTGCGTCATCAGCAACAATGATGCAATCCCCACTCACAACCTCTACAACCT
ATGAAAGGATCAACACAAAGCAAATTAGCTTCAATCGCATGATCATGTTGAATACACTACTTGT
GAGAACAGGGAACCCACTTTTCCAGTGAATTTCTGGTCGTGGATTGGCTTCGAGTTTGTCACTG
GTGGCTTAAATCCTGTCCAAATTCTCAACTGGTCCTTCTTAGCCTGAAGCTCAGCATTCTTCAG
CTTTATTTTTGCATCAACGTCCATCATGTTGGCACTCCACTCAACATACTTGGCAAGACCCTGC
ATAATTAATCATACAAAAGAATTTCAATGCAAGCAGATCTCATTATTAAAATAAATCTTAAAAA
GAATCATGTGAGTCAAATGAAAGGTAGTGGATAAATAATTGATCGTACATTTTCAACAAGCTCA
AGGGCCAGATCCTTCAATGTATCCCCATCAGAGTAATACACTGAGCCAATTATATTGCTGAAAC
TATCTGTGCCTTCCACCACAATTCGCACCTAGAGGAAAGTTCAAAAGAGAACAGAAGGAACTTA
TGAAATATAGTAATTATTGTTTGCAAAGAGGATTAAAAACTTTGAATCATGATATGTCTTACAT
CTCTATTGAGAACCCGTGTCTCTGTGAAGTGCTTAGCTTCTATTCCAAACCTGTCCGGTGGAAT
TTCAGTAGAAACCGCTGCTGCGGCAAGCCTTTGGGCTGTAGTCAGTGGTGCTGGAGCTTCCTCA
GAATCTCCACCGTTTGTAGCGCCATCAGCAGTACTCTCTGCTGCAGCCACCACTGTAGGATTCG
GTGGGCGCCTCCCCATGGATGGAGACTACATTTTTGTCTAATCAACATTCACCTTTCTAAACAT
GAAAAAAGAAACAATAGTAGACAAAAGGGTCCATGACAAGCATACCTGAACTCCAGCAACATAT
ATCTGAACAAATTGGAAACTTGGGAGCAAGTAAACACGAACTGTACTGCCATCACGAACTTGTT
CAACAATGGCTTCCAGACTCTTGCCTTTATTCGCAACTGCAAAACCCTTTGCATCAAAACCACT
AGCTTCACCAATTGCTGATGGTGGAAGATCTCTTATTGATTCTTCAGCAGCACCAGGTTCCTGA
AAGTTTAAAAAGAACATGCATAAAAAAGCAAACAATAAAGCATTCATCTCTTGCAGTACAAAGA
AAAAGGGGGAGGGGGCAGAAACAAAAAGATTTGCTAACCTTGCTCCAACGACCTAAACCCTGCT
GCTTAGCAACTTCCTCCAACCTTAGCAGCTCAGTAAGATATGGACTCGGTTCACCGCCCTTTGG
GCCTTGCTCCTTTACCCTTGCCCATCCTGCAGCAATTATCGAGTAGGCAACATTCTTGTCACCG
AGGTAAACAGTACCAAATTCTCGTCCAACATTTGGAGCTGTGTAGTCCACTCTGAATGTGACCT
CCTGTAACATGTTTGAATTTTTCATTGGTAACAGGGAAACTGGCATGTTTTCTACAAACACAAT
CGATATCTATGCATTTAAGTAAATTCAAAGAAGATCTAAAATTCACATGGAGTACCTTTCCTAT
GCAGAGTTTCCTTAGAAACTCCCTGCTTTCCCAAGCAAATGGTTCATCCACTCCACCACGGCGA
GC
Conservation Information
Conserved circRNAs NA
PMCS 0.189299486
Functional Information
Coding potential Y
Potential coding position 19103929-19101488(+)
19103969-19101474(+)
19103179-19101436(-)
19101443-19103943(-)
Potential amino acid sequence MQSFLRNSLLSQANGSSTPPRRASTSRCRILLLIKAIASFE*(+)
MVHPLHHGEPPHLAVEFSSSSKQ*(+)
MGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTET
RVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLK
NAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVN
LSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARV
LDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAA
ESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIP
KETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEARRGGVDEPFAWESREFLRKLCIG
KEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVA
KQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYL
LPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVS
TEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAK
YVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCII
VADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSR
RISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTS
KHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRH
SAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEARRGGV
DEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNVAYSIIAAGWARVKEQGPK
GGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKS
LEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSE
EAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSD
GDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIH
DQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEF
LRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQ
PGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTV
SAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIA
LMRRRILQRDVEARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKNV
AYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIG
EASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQSPSMGRRPPNPTV
VAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIV
VEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQ
LRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDAAPYGSPSAERRVNLSSIRAPKMG
NPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGS
PSQADGDDVSSIPSSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKG
VHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSF
SGVRCPGKDEPYSNEAIALMRRRILQRDVE(-)
MWRLAVVEWMNHLLGKAGSF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017