Detail information of BGIOSGA031384_circ_g.4


General Information
CircRNA Name BGIOSGA031384_circ_g.4
ID in PlantcircBase osi_circ_008717
Alias Chr10:24731758_24733816(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21415346-21417405  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031384
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031384_circ_g.2 BGIOSGA031384_circ_g.3 BGIOSGA031384_circ_g.5 BGIOSGA031384_circ_g.6 BGIOSGA031384_circ_g.7 BGIOSGA031384_circ_g.8 BGIOSGA031384_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031384-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAACAATTTTTCAATGCTAACATCTTGAAAGCTGCCCTTGAAGGAATGGGTCTCTGATGGGAA
TGCAACTTCAGGAAAGCTGGAAAGTGCGGCAGAACCcctcttgaacaaaacggttgagataaac
aattctaacttctgaaagctgcgctgatagactatagtcatacccactatagtcttcgtcatca
acattgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTTGAACAAAACGGTTGAGATAAACAATTCTAACTTCTGAAAGCTGCGCTGATAGACTATA
GTCATACCCACTATAGTCTTCGTCATCAACATTGTATGAACTAAAGTCAATCTGCACAAAGAAT
TAAAATGTTGTTTGTTTTCTTTCAAGCCAGAAGTAGATAGAAAATGTAAGCATAAGCAGTTATT
CCTCAACAAAAATGCATAAGCAGTTACAGCATACAACTAGGGAGTCCATTGAGTTAATCAAATG
GTAGTACCTCCACAAAAGAACTTCCTCCTGGATTACGCATATCACAAACCCAAAAGTAGGGATG
ATTGCAAGAAAGACTGTCATCGCTTATTTTAAGGTTTCCAAGTGCAGCCTCTATACTGAACGAC
GATGTGAACACCTTAAAATGCCAAGATAGTCATGTATTAGGAAAATCAAATCAAGATCAATCAT
ATCCATTAGAGATAGATGATAATCATACCTTTATATCAGTTGAGAGGTTATTTTGTGATAAAGT
AGCAAGCCGGTCACCATTTTCATTCATTAATAATATTTGTGCCTCTGCCATGCTTGATGTTAGA
TGAAAAACTGTTCTGCTTTTACCTTTAGCCAGTAATCTTTTTATGACTGGTCCTGCTTCCAGAT
CAGACTTAGGTTCCTCAACCATATTATGTTCTACAGGATCCGATGTTGTATCTTTATTTTTATC
AGCATCAGGGACATTTGCAAGGTTGATGGCATTCATAAATTCCATGATTGCAATAACAGTTGGT
CGATGACAGAAAAAGGTCAGAGTAGCAACACTTATCACAACCTGGTAAAAACAACAAAAAATCC
GTCTGTCACACAATTGGGAGAAATAGTACTATCCATATAAATTTCGAAGTATGTACCCCTTTAT
GCAATAAAGAATTGCTAGATACTGTCATACTGAGATATTTACCCTGTTATCCAAGTTGTTGTAT
TGAGGGGACTGCTGATCATAAATCACAATCTGAGCTTTCACAAAACTTTCAAAAGTAATGTCCC
CTGAAGTGAATCCGGCAGATTGAAGCTCAATATCTGGCAGCAAACCAGGAATTCGACTGAATGC
AGGTGGCTGCAAAGAAGGGAGGCTAGTAGGCAAAAAGTTCTGTGTGCTGAAATAATCTGATATA
CTCCTCTCATGCAGCATAGGTGTTTCAAATTCATCAAAATCATCTGATGCTTCAAAAAACCTTT
CTTCACTGTCACTTTTCTTCAGTGCAGTACCTCTAGGTCCTGCACTATTCTTTCGACTAGGAGT
TGGGACTTCGTTGGTTTGCACGCTATTGATAAAGGATCTCGCCAAATACCTTGGTACAGGACTA
CCAGGGTAGTTATACTGATCTTCAATTTCCAGAGATCGCAAGATAGTACCGATTAGTAGATTGC
CACCCTTCATTGAGAGTTCAACCTGTTTGTTTCCACAAAAAAAAAACGTAGCTTAATGAATCAG
TCATATAACAAGGACAAAAGGTAATTTCTTACTCCCTCCATCCCGGAATAAGTTCATTTTTTGC
CCCTCTCATTTGTCCCAAAAATAAGTTCATTTTTAAGCAATCGTGGTATCGTGGTATCGGAGTT
TATAGAAATAGGGGATGAATGCATTGGGAGTAGAAAGTGCTGAATAATTGCGTTGGGATTTGAT
AAAGTTGGGGTATTTTAGTCTTTTTGGTTTTGTATTGGTATGTGTGGGATGGGTGAAAATGAAC
TTATTTTGGGATGGAGGGAGAAGGGAATAAAGAGTTACCTGGCCACCAACTGCCCGAAATTCAA
ACAAGCTGCTCTCCTTAGCTAGCAGAACTTTTTTGAGTTTGTGGTTGCTCTACAGAAAAGATAG
TCACACCATTGATTCAGATGCAAGTTTACAAGGAAAATTGGGTAAGAGGCACACCTCATAGCCA
CATGAGAAGCAGATCTTTAGCTCATCAAGAATGCCAGCAACGAACAATTTTTCAATGCTAACAT
CTTGAAAGCTGCCCTTGAAGGAATGGGTCTCTGATGGGAATGCAACTTCAGGAAAGCTGGAAAG
TGCGGCAGAACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021