Detail information of BGIOSGA031384_circ_g.3


General Information
CircRNA Name BGIOSGA031384_circ_g.3
ID in PlantcircBase osi_circ_008716
Alias Chr10:24228404_24228593(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21403955-21404144  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031384
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031384_circ_g.2 BGIOSGA031384_circ_g.4 BGIOSGA031384_circ_g.5 BGIOSGA031384_circ_g.6 BGIOSGA031384_circ_g.7 BGIOSGA031384_circ_g.8 BGIOSGA031384_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA031384-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCTTGTCTTTTCTTCCAGAGATATCAATTAATTGCAGGTTAATCGGAGGCAGTCTTGCAAAA
GATATCCAATAGGGAACATATATTCTGATAGccagatgctatagtgtatccttcaaccaattct
tcatggtttatttcataaagtattttctcgctcctttctgaacgagggcgtgcaagaaaacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGATGCTATAGTGTATCCTTCAACCAATTCTTCATGGTTTATTTCATAAAGTATTTTCTCGC
TCCTTTCTGAACGAGGGCGTGCAAGAAAACGCCTCTTGTCTTTTCTTCCAGAGATATCAATTAA
TTGCAGGTTAATCGGAGGCAGTCTTGCAAAAGATATCCAATAGGGAACATATATTCTGATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021