Detail information of BGIOSGA031384_circ_g.6


General Information
CircRNA Name BGIOSGA031384_circ_g.6
ID in PlantcircBase osi_circ_008718
Alias Chr10:24241704_24246969(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21417255-21422520  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031384
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031384_circ_g.2 BGIOSGA031384_circ_g.3 BGIOSGA031384_circ_g.4 BGIOSGA031384_circ_g.5 BGIOSGA031384_circ_g.7 BGIOSGA031384_circ_g.8 BGIOSGA031384_circ_g.9
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA031384-TA:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATCGGCTCATGTCAGATTTCAATAAGGATGCATATACAGATACATATGTCTTTCTAAGTCTT
GCATTTTTCAGTAGTTGCTCCCATGATAGATTTCCAcctcatagccacatgagaagcagatctt
tagctcatcaagaatgccagcaacgaacaatttttcaatgctaacatcttgaaagctgcccttg
aaggaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR166c-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021