Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os01g0685800_circ_g.6 |
ID in PlantcircBase | osa_circ_003332 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 28280575-28280886 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0685800 |
Parent gene annotation |
Similar to ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14). (Os01t0685800-01);Similar to ATP synthase subunit bet a, mitochondrial. (Os01t0685800-02) |
Parent gene strand | + |
Alternative splicing | Os01g0685800_circ_g.1 Os01g0685800_circ_g.2 Os01g0685800_circ_g.3 Os01g0685800_circ_g.4 Os01g0685800_circ_g.5 Os01g0685800_circ_g.7 Os01g0685800_circ_g.8 Os01g0685800_circ_g.9 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0685850-00:1 Os01t0685850-00:1 Os01t0685800-01:1 Os01t0685800-02:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.787044551 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
28280630-28280883(+) 28280645-28280577(-) 28280625-28280833(-) |
Potential amino acid sequence |
MLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHV AEVFTGAPGKYVELKESVQSFQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQN YKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVQSFQIS ELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTV ARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVQSFQISELGIYPAVDPLDSTSRMLSPHVLG EDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAP GKYVELKESVQSFQ(+) MGRQHSGCGIQRIDSRINTKLRNLETLNALLQLNILSRCTRENFGNVEGLAKEPLNLPSTSDCQ LIILTELVHSQNGNNILKILVILKNLLNTTSCVVVVLTQYMGRQHSGCGIQRIDSRINTKLRNL ETLNALLQLNILSRCTRENFGNVEGLAKEPLNLPSTSDCQLIILTELVHSQNGNNILKILVILK NLLNTTSCVVVVLTQYMGRQHSGCGIQRIDSRINTKLRNLETLNALLQLNILSRCTRENFGNVE GLAKEPLNLPSTSDCQLIILTELVHSQNGNNILKILVILKNLLNTTSCVVVVLTQYMGRQHSGC GIQRIDSRINTKLRN(-) MWNPKDRQQDKYQAQKSGNFERSPSAQHTFQVHP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |