Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0685800_circ_g.5 |
ID in PlantcircBase | osa_circ_003331 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 28279342-28280125 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0685800 |
Parent gene annotation |
Similar to ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14). (Os01t0685800-01);Similar to ATP synthase subunit bet a, mitochondrial. (Os01t0685800-02) |
Parent gene strand | + |
Alternative splicing | Os01g0685800_circ_g.1 Os01g0685800_circ_g.2 Os01g0685800_circ_g.3 Os01g0685800_circ_g.4 Os01g0685800_circ_g.6 Os01g0685800_circ_g.7 Os01g0685800_circ_g.8 Os01g0685800_circ_g.9 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0685850-00:4 Os01t0685800-01:4 Os01t0685850-00:4 Os01t0685800-02:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.469288733 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
28280071-28279369(+) 28279659-28279664(+) 28280064-28280124(-) |
Potential amino acid sequence |
MLKGRMCFSSLITFSVSLSNKPLPPYPS*(+) MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGA RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQQQTTSSLSIVKPLLLLSKLQSNRFLLLEL RSWISLHPIKEVVKLVSSVVLGWAKLYLLWS*(+) MLGNSQTSQSNTSTSTRGLIHLPVDKSTLALTLLVTKLNHTTLNHFPVQVITLTSTFSNTSKDR ETTMSLRNIVDQLHNKYSFAHPSTTEETNFTTSLIGCKEIHDLNSSNKNLLLCSLLNKSRGFTM DREEVVCC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |