Detail information of BGIOSGA013864_circ_g.2


General Information
CircRNA Name BGIOSGA013864_circ_g.2
ID in PlantcircBase osi_circ_005224
Alias 3:39181302|39182987
Organism Oryza sativa ssp. indica
Position chr3: 39181302-39182987  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013864
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013864_circ_g.1 BGIOSGA013864_circ_g.3 BGIOSGA013864_circ_g.4 BGIOSGA013864_circ_g.5 BGIOSGA013864_circ_g.6 BGIOSGA013864_circ_g.7 BGIOSGA013864_circ_g.8 BGIOSGA013864_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013864-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTGAGAGGACACTAAATGGTTTTCGTCAAGGGAAATTTACTGTTCTCGTAGCAACCGATGTT
GCTGCCCGTGGTCTTGATATACCGAATGTTGATTTGagggctgtattgattccagctcttgacg
gccgtgacctgattgctagagcaaagacaggaaccgggaagacgctagccttcggcattcccat
gatcaagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGGCTGTATTGATTCCAGCTCTTGACGGCCGTGACCTGATTGCTAGAGCAAAGACAGGAACCG
GGAAGACGCTAGCCTTCGGCATTCCCATGATCAAGCAATTAATGGAGGAGGATGATGGACGGAG
TGTGAGGTATCCATTCATCTTCCTATGCAGCTTCACATTGTATTGCATGACAATCAGTTGATAC
TTAACAAGTGCATTAACCCTTTTTTTTTCCCTTTTGGTAGGCGAGGTCGTATTCCTCGTGTTTT
GGTTCTAGCACCTACTAGGGAGTTAGCCAAGCAAGTTGAGAAGGAAATAAAAGAATCAGCACCC
AAGCTCAGTACAGTCTGTGTTTATGGAGGTGTCTCATATAATGTCCAGCAGAACGCACTCTCCC
GTGGTGTTGATGTTGTTGTAGGAACACCTGGTCGCATTATTGATTTGATAAATGGCGGAAGTCT
TCAGTTGGGAGAAGTTAAGTACTTGGTCCTTGATGAGGCTGACCAAATGCTCGCAGTTGGGTTT
GAGGAGGATGTGGAAACGATATTACAACAGCTACCAGCTGAGAGGCAAAGCATGCTCTTCTCTG
CCACCATGCCTGGTTGGGTGAAGAAATTATCTAGGCGATACTTGAACAATCCTTTGACAATTGA
CTTGGTATGAACTTCGTATTTCCTTCCATTTCCATTTTTATTGGTGTGAAACATGTCACTCTTG
TTATTTTTATTTGGTTATGCCCTCAAACAAAAACATTCCAGGAATCAGTTTCATCTAGTATAAG
AGCATTCTTACATTTAATCACAGATATCATTTTGATTTTCCAAGATCAGATGTGTCAGTTGTTA
TGATCATGTTATATGCTGTAAAAATAGTAAATACAAATTCTGTCCAGCACACATGTAAGAGGAT
TAAGAGATATTAGCACTGGTCTTGAGTATGCTAATTGCACTTACACTTGAATACCTGTTGTTTC
TTGCAAGATATAATTGTGCACATGTTCTGTGAAGGTTTACTTTTATTTTTTTTGTCTGGATTAG
TCATCTTTTATTGTCATGTGTATACTCAGGTCGGCGATCAAGATGAAAAACTTGCTGAAGGAAT
CAAACTTTATGCTATCCCGCTCACATCTACATCAAAGCGCACTGTTCTTAGTGATCTCATTACG
GTATGTTATTGCAGTTCATGGATTTTTTAGCTGCCTTTTCCCCTCCTCTCTTTTCGGCTCAGCC
TCCTGAGATTCAGAAACTAATAAGATCATGAAACCAGTTACAGTTTATACAGCTATGTTGGTGT
ATCATCATGCCAGTAGATGCCCGATAAGTTTTTTTTTTTTTTTTACTTCAATCCAATTAAGATT
TCAGAACATAATTCATTCATACATCTTCCATGTCTATCGAACTTTTTACTGACTTTATAACTAG
TCTGTTTTGCTGAGCGTTGGCCACTCAATTATCTAAAAATATCTTGTTATCAGGTGTATGCAAA
GGGTGGGAAAACCATTGTGTTCACCAAGACGAAAAGGGATGCAGACGAGGTATCATTAGCACTG
ACAAACAGTATTGCTTCGGAGGCACTGCATGGTGATATTTCTCAGCATCAGCGTGAGAGGACAC
TAAATGGTTTTCGTCAAGGGAAATTTACTGTTCTCGTAGCAACCGATGTTGCTGCCCGTGGTCT
TGATATACCGAATGTTGATTTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 39181395-39182917(-)
39181393-39182984(+)
Potential amino acid sequence MGMPKASVFPVPVFALAIRSRPSRAGINTALKSTFGISRPRAATSVATRTVNFP*(-)
MIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNAL
SRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLF
SATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGK
TIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP
NVDLRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRE
LAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKY
LVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDE
KLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLRAVLIPALDGRDLIARAKTGTGKTLA
FGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQ
QNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQ
SMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYA
KGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG
LDIPNVDLRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLA
PTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLG
EVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVG
DQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEA
LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021