Detail information of Solyc02g094610.1_circ_igg.1


General Information
CircRNA Name Solyc02g094610.1_circ_igg.1
ID in PlantcircBase sly_circ_000887
Alias NA
Organism Solanum lycopersicum
Position chr2: 55175564-55180182  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc02g094610.1_circ_g.1 Solyc02g094610.1_circ_g.2 Solyc02g094610.1_circ_g.3 Solyc02g094610.1_circ_igg.2 Solyc02g094610.1_circ_igg.3 Solyc02g094610.1_circ_igg.4 Solyc02g094610.1_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCATACATAGGGGTAGCGGCATCTTCACATAACTTGAGCAGAGCACTAGCACAAGCTGCTGAA
CAAAAGGGTTCTGAGATTCCCTTTGCAAGAAATAATcccgatgactgaattgcttgggaaagag
ctctgcatgctgccatagatagaacagcatttccaatgtgcatcgactgaaaaagtttttctaa
catttgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCGATGACTGAATTGCTTGGGAAAGAGCTCTGCATGCTGCCATAGATAGAACAGCATTTCCAA
TGTGCATCGACTGAAAAAGTTTTTCTAACATTTGCCAGAATACTCCTAGCAGCGCTACAAGAGG
ATCATCCACATCCGAACCAGCAGAAGACTCTGTTGACAGATGGCTGAATACAGTTCCCAACCTG
ACCAATTGGCCAAGGCTTTACTACATAGAAAGGTATAGGGATGGAAAGCAAAGACCAGCAAGTA
ATTCATATAAGTCCTTTACAGAATGGGGAAAAAAAGTTTAGATTCTTCCCAACCTTTATAGAAC
TAGTGTTTTTGCAGAATCTACGTCCAATACCTTGTTTTAGACTCTTTCTGATAATTAAGACAGA
CTTAGAGAACAAAGTGATAGAAAGTATAGCAGCGAATAATACACGTGATCATACACATACTGCA
GATAAAGTTCTAACAAAAAATAATAGAATTTTGCATCAGTCATGTGGAGGAAATTGGTTCACTT
CTCAAGTAAATGCTCTGTAAGGACTCAATTTTGTATGAAATGTCTCATACCAGGTTTCACACTT
TTGGGAAGAAAAAGAAGGTAAAATTCTATCAGAGTCCTTTTAAAAATAGGATGCTACCAGGAAA
TGTTCAGATGGTGTATTGCTCGAAAGATGGCAGAACATTTCAAAATTGGTATGCTTCTGTGCCA
ATGATAGCCTTGCACTGCAAACTAGAGAGCAGAATAACATAGAACATGGTCTTTGTGAATGTTA
CACTTTAATTGCTCTCCGTGTCTATGGCATGCAAACCTTGATAAGAAAAATATCTGAACTAATG
CAGATGCAAAAAATAATAGTGTAGCAATAGGTTCAAACCTATGTAAACCTCTTCTTGCAGCATT
AGTCAACTGAGAATAAGAAGCAGGATTATGCCTTAAAGAGTGGTTTTGATTTTCATCAATCTGA
AACAGAGAAATTCATTTTCAGTTAAGGTAAGAGCTTAGAGGACAGTTAATAAACAATTTACAGT
ACTCTGCATCACGTGCTTTCAAACTGATCCAACTTTTTTTTTTGATTAAGGTGAATAATTTTAT
AAAAATGGGACAAACCTGAAAAGACCCAAAAAAAGGAGAAAAAAATGATAAATGCCAATGGAGA
TCATAGAGAGGTGTCACATCACGTTGTCTGTGTGTGTGTGTATATATATATATACATATAAATA
TATATATGGTTCTCTAGGAAAGAAACTCAATCATCTATGCGCATTGGGGTCTCATGGGTAAATT
AAAAAAAAAAACTAGAAACATCAGATTGTTTTGCAATTTCACAGTATCACTATCAATCCCTTCA
AACGCTTTCATGTTTTAGTCCTTCCAAAGAATCTGCATGATGCTTACGGAGTAACATCCCATGC
CCTAGATTGTCTCTTTCTTCTTCTCAACAGTGTTTCGGAAAGCAAGAAGCGGAAAAAAGTAACG
AGGGCTCGCTTCACCAAAGCGAAAAGCATAAAGCGAAGCACCCACTTTTATCAAATAAAAGTGT
TGTTTAGTATAAAAATAAGAAAATATTAAGTATGCATAGATAAACAACCAAGAACTCAGTAAGT
TGAAAAAAGAAAACCCTAGCAGTAGGCCTGCAGCACAGAAAAGAAGAAGAGATGAAAAACTCAC
CTTGCAAGTCGTTGAAAGAAAGTTGCAGCAGTCGCACAAAAGAGGGAAATGTTTGGAAAGAAGT
CTTTAAGTATCTTTACAGATTTTTTTAAAAAAACCTTGTTAAAGCTAACCTCGCTTAAGCGAGC
TTCTCACTTCAGTCCCAGAAGCCCTCACTTTTTCACCATAGCATTGCTTCAAGGAATAAAAACG
ACAGCATGTCGCTTCGCTTCATTTTGCACTTTAAGCGACTAAGTGTTTGCCGGTGAATGCTGAT
GCAGTGAAAATTCAGAGGAAAAGGGTATAGAAATATTGAAGTAGAGAACAAAGCAAAGAGCATG
AGACATAACACCAAAGGTACAAACGAAGGACTACTCGAAAAGAAAGATTCTGAACCAATAAAAA
ACAATTTGGTAGAAGCGGATCATATTCATGTTATTTGGCACAAATATTGGAAGCACCTATGAAA
TACAAGTAAATAAAAGTGTGGTTTTTCAGGTAGAATCATGTTTTTTTCTGTTATTCTAAGATCT
TGTGTGCTTTTTGTTTATGCAGGGATTATTTCCCTTTCCCTTTCCCTTAATAAAAATATGCTAA
GTTGGATATTTGGAGACAAACACAAGAGTCTAACCTGTTTGGCCATGAGGACTTTTAACATTCT
TTTGGATTTGTTTTTTTACTTTATATGAAAATCCAAATTTGGCCATGAAAATTCCAAATTGAAG
TTGTATTTGGAATTTGGAAAACACCAAAAACTTTGTTTTCACTTTGACAATATTTTTCTTTTTC
CAATTTTACCATGACTTATTTTATTTTTATAAAATTACCTCTTTTAAATTATATTTCATATTTT
GAGGTAAAGTACATTCAAACAACCAAATATTATTTGCAAAAATTGTAACTGTTTCTCTAACTTC
AAAAACTTCAAATTAAGTAAAAGAAATTGTGATAGTATGTAGTAGATTTTATATGAGATCTAAA
TTATGACATTATGTTACTATCTATTTTGAGATATAGCTCTTTTAGAGCACATTTGATGGTATGT
TTCCGGTAAATGAGAAAAGTTAGGTGATTTTGTTAGTTCTTAGAAATCAAGAATATAAACCATA
TTTAGAAAAAGTACATTCAAATTCTAAATATTCTTTGCAAAAGTATGGCCAACCACAACTCCAA
CACTAACTTAAGAAATTCAAAATAAAGTGAAATATTTGTTTTCATGTCCAAACTCCAAACACCC
ACTAAAGGGGTCAAGTTGAGCACGACCAAGACAAATTGCTTGGAATTCAAGTTCAGCGACATAA
CTCATGAGGTTGGCGTGAAAGTGCGGCTTAATACCCAGGTCATCCAGAAAAAAGGAAGTTTTAA
GTATCATAGGTCATAATACTAAGTAATCAGAACACTCACAATAACGTCACACACTGTATTGGTG
CATGGTCGATCAAAAATAGAGGCTCAAATCCGGAGTCTTGTGTGACAAGGGGTCACCAAAACTT
CAAGTTCTACAGAGTGGTGATAGTTTCTTGTTTCTTTAATTTTTGTTACTATTTATTGTTCTTT
ATACTTCGATTATCGTATTATTTTATTATAGTTACTGCTCCTTTTGAGCTTGCTTTGTCTTGTC
GTGTTTAGTATCTTTCCTTGGTTTCTTCACTCTTGTTATTTTCATGAAACGAGGGTCTATCGAA
AACAACCTCTCTCCCTCCCAAGATAGGGGTAAGGTTCGGCGTACACACTACCTTCCCCAGCCCC
ACTTGTCGGATTACACTAGGTATCTTGTTTTTTGTTGTACTTTATAAAAATATGAATTTCATTT
TATAAAAATATTAAAGTTGATAATTGGTCCATGCACAACACTAACAACAATAAGACATAACTTT
AGGCGGTATCCCAACAAGGAGACCTATGTTACTTGGACTCTCTAATAATGTTGTCGCACCTGAG
TTGAATACACTATTTGAAGTATGTGACACACACCCATTGATATTTTTGAAGAATCAGAGCTACA
TAGAAGGAGACTAGGTGAAACAACTCAAACAAGATTATTTAATACGAAATGTTGAAAGAATTTC
AAAGTAGTATGGGGAAAAAAGAGATACAATACTCTTTATAGAACCACCATATAGTTATATACTG
TTAGAAGTTCATGACATGAAAGAGATACAAGAAAAGAAGAAGATGAACTTACTAGTTTGCCAAT
GGCTTCGTAGCAAGGTGAGACCAACCTAGCTAACAAATTATTCTTCAGCTCCTTGTTAGGAAGG
GAACCAAGTACCAATGTAATCGCACTGACTACTTTTTCTTCATCCTCTAGAGGCAAATGCCTTC
CATCCAAACTCTAAAAAAATATGTCAAACACAACGAACAAGAGAAACAATAGCAATTACACTTT
AGTTATCACTCCAATAAATGATAAACCAAACTTACAGATCCAAGAAATGAGAATACCTATGCGA
ATTATTACCAGGTAAACAATTTTGTTTATCAATTTTTTAGTTAAAATACCCCTCCAATCACCCC
AACTATCAAAACAAAGAAAAAGTCGATAAGGTCATAATATTGAAATGGATAGCTATACTTTCAA
CTCCTCTCACTCTCTAAATCAACTATCATATGCTTTTTTCTTTCCAATTTTAATTTTCATTAAA
TTTCAATAAGCTATGAACGTGTACAAGTGCGTGACATTTAGTCAATATTATTGGAACTTCATTT
CAAACAAATGCCTTAATAACTAAAAACTATTTTTACTTGAAAATGATACTGCAATACAAAATTA
CTTGAACAAAGACCAAGGACCTTCAAGTATAAATATTTTGATACACCATACAGTTTATAGGACA
AACCTCTCCAACCCAAAGTAAGATCTCCAAACTTGAATGTTCATACATAGGGGTAGCGGCATCT
TCACATAACTTGAGCAGAGCACTAGCACAAGCTGCTGAACAAAAGGGTTCTGAGATTCCCTTTG
CAAGAAATAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.136957496
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020