Detail information of Solyc02g094610.1_circ_ig.1


General Information
CircRNA Name Solyc02g094610.1_circ_ig.1
ID in PlantcircBase sly_circ_000891
Alias NA
Organism Solanum lycopersicum
Position chr2: 55186833-55191304  JBrowse»
Reference genome SL2.50.38
Type   ig-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc02g094610.1_circ_g.1 Solyc02g094610.1_circ_g.2 Solyc02g094610.1_circ_g.3 Solyc02g094610.1_circ_igg.1 Solyc02g094610.1_circ_igg.2 Solyc02g094610.1_circ_igg.3 Solyc02g094610.1_circ_igg.4
Support reads 2
Tissues fruit
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGTTCACAGTACTAACCGCATTAAGTGCAAACATTTTAGCTTCCACCTCCTTCCAAGGAAT
ATGTACATTGTTACTGGTCCAACCTCCAAGGAAGATagcaaagatctggtattagtttgacaag
atatccactttgaataggaagcaacaacctctgcagctgatttgtatacctggaatatcaacaa
tagaaacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCAAAGATCTGGTATTAGTTTGACAAGATATCCACTTTGAATAGGAAGCAACAACCTCTGCAG
CTGATTTGTATACCTGGAATATCAACAATAGAAACGGAACATAATTAAAGAGAAGAGGGTCAAC
CAAAAAGTACTACACATTGTCATAACTCAAACCTAATGAAGCAAATAGTTAGTCCAGAATCATG
TCAAAAAAAAATTCAGTATGTTTCTCTTTCTTCCAAACAACTTCATCTATTCCAGCATCCCCCT
TTGGCAACAAGGATAAGCGAAACAAGAAAAATCGAGTAAGATGGCACATACAAGTTTCATGAAG
CCCTTAGCATCATCCTGTGGCGTACTAGATAAAATTGTGACCAACTGCATGACAAATGAGAAAT
CAATGTCTTGGGTCTCCATGATAATAACTTCAGCTATCTGAAAAAGAAAAGAAATCACACAGTG
AACTTCCTAGCATGATCAAGTTCGTGTCCTTTTCATAAATGAAAACTGAAATATGATCATTAAA
AGAGCAGAAAAGGGTCAAAAATACTCTTGTACTATTCGAAAAGGTTTAAAAATACCCTTCATCC
ACCTATTGGACTAAAAATAGCCCTCAGTCAACCTTTTTGGTTCACTATTACCCTTCAAAATAAC
AACCTTATATTTTTTAATTATTATTTATCACTAATTATTACGTGACATCTTTTTATAGGATAAA
ATTAAATTTCAACCCACCAAACTTTCGCTTACCCACCAGACCCATATTGACATCTTTTGACCCA
AACCCAATTAAAGATCCATCAAAAATTTAAAAAAATGAATCATCTCTTCTCCCCTAAACCCAAT
ATCCTATGCTTGTCTTCACCTTCATGCACTTCAGATCCAAAGTCTCCATTAAAATGAATTTCAC
ACCCGTGTGCTATATCTTTGTAATCAGATAGCAAATCCTTGACATATGGACTGATTTCATCTCT
CCAATTCCTTTTTTTTCAATTAAGAAACTTCATATATATTGTTGAAACCAAACCAAAACAAGGA
ACATTATGTTTTGCAAGTCTAATGCCTCAGAAACAGAAAATAAATTTTAAAATACTACCGTATC
GGAGAAGAGAACTACTAGAGCAACACAACAGAGCACATAACAACTAATGAATCAAGCCTCAACC
TTCTTCAGTGGCGTGGACAATAATCTTATTGGCAGGTTTTGCCAAGATAATAAATGTCACCTTA
ATTAAGTTCCAATCTTTTTTTATTTCTAATGGATCTTTTGATTTGATTTGGGTTGAGGGATGTC
AATATGGGTGGAGAAAGTTTGGTGGGTTGAAATTTAACTTCATCCAATAGAAATACGCCACGTA
ATAATTAATAATAATAACAATTGAAAGAATACAAGGTTGTTAGTTTAAAGGATAATAATGAATC
AAAAAGATCGATTGAGGGGTATTTTTGGCCCAATAGATGGATGAGGGGTATTTTAAAACCTTTT
CTAATAGTACAGGGGTATTTTTGACCCTTTTCCGTTAAAAGAGAAACAACATGATTTGAGCATG
CAAATCACAAGTGAAGCCAATGAAGAGCGCAGAAAGCATGACACAACAATGTCAAATTACCTGC
TCTTGTATAATCAAATCATGCAGCACATTAAAAAGGATTGCTGAAAACAGCTAGACCTCGAAAA
ATGAAAATGATCTCTACAGAAAATATAAGTTCATGATCACAAACTACAGCTGAAAATCATGCAT
GTACTCCAACAGAACAAAAGAATGTAAAGAAGAATTTGCTCAGAGATATCTCAAGGAAGCATTG
TGATCACAAAAGAGCATACAAAGGAAGGAGTGACTACAGTCACTTACTATTACATCGTAAGATT
GTTGATAACAGGGAATTTAATGGCTGGCAGCCTGGCGCAGACAAAGATCTGATGCAAGGCAGGA
GCGAAGAGAGTATGGATTTTGTATCTCTAATAAGTTAGAAACATTTTGCGAAAAAATTATAAAT
ATATATTTAATTTATTTTCATGATGGTGGTGTCCTAGCCAGCTTGCGCACACCAGGTGTGCTTT
GTATCAGTTTCACAAAATGAAAGAAAGTATAAATAACATTTTGAAGTGATTCCTATTATGACAA
AGTACTGAACACAAAATTAGTTTCATAATTAAGAAAGAAGGTTTGTTTAAGTATCTTCGGGAAT
TGAAGACACAAGGCTCAAGAAACTTACCTATAGAAAAAGCAGGGGAAAGCCTCGCAATGCACTA
GTGACGACCAACTTACAACTTATGGCAGAGGAAGTTCATTGTTTAAAGATCTTGAGATGCATAG
ATGATTAGCTGAGAAGTTAAAACCATCTTAAAGAATGTGATTTGACACTGCTTACTAGAGCAGT
GTGGTCTGAATATTCATGTCTACTCCAACTAGTAATCATTAGGAGACTTTGGGCCAAATCGTGT
GTCACTTCGAAGGAACACCTGCCGCAATCTGTTATATAGAAACCACTTGGGTGTTGTTCTAGAT
GCAAATCAGAGGGGATCTAAAGTTTTCCAGGGAACAAGAGGATACAGACCTTGTTGGAGATAAT
TCGGTGTAGTATAGAAAGTAAGAATTAGTGGTAGTCCCCTGATCTAGTGTTGAATCAAAGTAAT
GAACTATGTCATAGCCCATTTGAAAGGTAATATAGATATGCAGTTGATAGATGAGGTTAGTATT
GAGACAACTCAACCTGCTAAGTTGTAGTGTGATAATCGTGATGCTCCCTATATTGCTCTAATTT
GGCCGTTCACAAGGTAGGAGTAAGGCTGCATACACACCACCCTCCCCACACCCCACTTGTTGGA
TTTCACTAGGTACGTTGTTGGTGTTTACCAAAAGATATAACAGAAGATTATCTCGATGAGACAT
ATCATGACAGGAGAACAGTCAGGTGATGTCTTCACAAAGTCCTGGATGGAGCTCTAGTGAACTA
TGTATATAACAAGTTGGACATGATTAACATCTAAGGTCCAACCTAACACTCTAGTGGAGAGTCA
ATCAATATGTATTTTGTAGTGCTGATATAGTTAGCATAATTGTAGGTACTTGAATTGCTGGAGA
TTCCAGGGACTGGTCTCGTATTAGTTAAGAGATATATTAGGAAGAGGCTTACACATAATCTTCC
ATTTTACCAAATGTGTGAAATAAAATCACCTTTAATTGCATATTCTATAAACTAGATGTGAATA
TGTGTTTACACAAACTGACATGATCATGATAACTAGTGCATGTACAGAAGATACATAGGTATAT
CACAATTGTGGATGACAGATAGAATGACATTGAGGTACTAAGGGATATCACATTTTCTGTACAG
ATGTATTATGTAGGTCTAGCAGGAAGAAACAAAATATCAGGTGAAAGACAATATGGAAGTTTGA
AATTTTACTGTTAACAGCTTTAAGGACATTTCCATCATTTTAACAGAAAAGTGCTTATTAACAC
CATTTACGAAACATATCAACAACTTATTTTTCAGTTTTACCACCTTTTGCCTCTCGAGGTAGGC
CTTGGGGGCACATTTACTTGGGGGTTTATTAAGGGAAAAAGGCAAACACCTAACCTAACATGAA
GTTAATGTTTTGACAGAGAATTCAGTGTGTGGGATTTTATTGTCGAAAATGTCATAACAAAGAT
CATGACCTTTTATCTGTCTTTGAGGATACCTTAATAAAAATGTCACCAGGTATTCAATTTCTAA
TTATCACGTAGTTCAGCTTTGGACTATAAGAACTTGGATTCTAAGAGCATGATTTTAGCACTTC
CAAACACATAAAATAAGCGATTCATAATTTCGATCAACGACAGTTTTGAGTATAAGAGCTTTAT
AACCAGAAATAAGTGGGATCTGCTTTCACCTATGGCATAGATGCAGTTAAAAGTAGGTGTTAAC
TACAACGATTGAGACTTTGCTTCTCACAAAGCTGCATGAGTTCATACAGCAGCTAACAGTGTCA
ATGTTCTATGCTTTTAAGTACTAACGTTCTCACTGTTGTGATACACTTCTACCTCACAATGCTA
CACATACCACTAACACGAGTATAGACAATCATCCAGCATGTATCGTCTCATTAAAATCATGCTT
CCAACTCTACCAAGCAATTGATGGGTTAAACTATCCAAGGTTGATTGCTGCAGTGACAGTTACA
AATGTAAAATATACTGCTGTTCCTGCGATTTCTAGAAAAGAATTTATGGTTTATTTTCTCTTCT
ATTTGTCCTTTATGCTTTTTCTTCTCATTTTCTGCTGCAGATATTAACCTTGTCCCAACGCTAA
TTAGCAAAATCACAAAGAATTGAGTATAATGAAAGCAGAAATTAGGAGATGAGAGCAAAACAAT
GCATATGTTACTGCCAAGGTTTTGGTTCACAGTACTAACCGCATTAAGTGCAAACATTTTAGCT
TCCACCTCCTTCCAAGGAATATGTACATTGTTACTGGTCCAACCTCCAAGGAAGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.123611768
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016