Detail information of Solyc02g094610.1_circ_g.3


General Information
CircRNA Name Solyc02g094610.1_circ_g.3
ID in PlantcircBase sly_circ_000886
Alias SL3.0ch02:55808841|55813655
Organism Solanum lycopersicum
Position chr2: 55171705-55176519  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc02g094610.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc02g094610.1_circ_g.1 Solyc02g094610.1_circ_g.2 Solyc02g094610.1_circ_igg.1 Solyc02g094610.1_circ_igg.2 Solyc02g094610.1_circ_igg.3 Solyc02g094610.1_circ_igg.4 Solyc02g094610.1_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Solyc02g094610.1.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATAGGTTCAAACCTATGTAAACCTCTTCTTGCAGCATTAGTCAACTGAGAATAAGAAGCAGG
ATTATGCCTTAAAGAGTGGTTTTGATTTTCATCAATccttcggagagcagcggatgaaaataga
tgcgaaattagcaaaggcctccaccagatcaggctcttgatcacatatatatgaggaagtaaga
gccataat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCGGAGAGCAGCGGATGAAAATAGATGCGAAATTAGCAAAGGCCTCCACCAGATCAGGCTC
TTGATCACATATATATGAGGAAGTAAGAGCCATAATAGATGCTGACTTGGAAAATCTTTCAAAG
ATACTGACAAAAAGATGTCCATATTCTTCTCTACTGCCAAATTCCTCAATGAGAACAGAAGCTG
CAAAGTTACTGATTAGCTGAGAGAAAGGTAGTTGTACTGGAAATATAAGCAACTCAGCTTAGTT
GACAGTTACCAACTCTTACGACTATCAAAAGAAGATCAGATTCAAGCAGGAAAAGACACAAAGA
CCTAAAGCTGTTTCTGGTATAAATTTCCACAGCCAAAAAAAAAAAAGTTAAAGCCTTTGCTTCA
GCACTAAACTGAGACTTGTTCTAAGAAAAGTTCAGAGAAATAATGATACTGGTTTTGCAAAAGG
TCATAGGGGAAGTAAAACACATCTAAGAACGAAGAATTGTACACATCAAAGCTTTGAAGCAATC
TATAACACTCTACCTGTTCTTATGTAGCAGTCATGGCTTTGGAATGATACAAAGTTAGTCGATA
AACAATTTAGCACTCCTGGCAAAATGGTCGTGAAGTGCTGACCTGCAAATGTAATGCACTCAAG
CAGTAAGTAATTTATGTGATCAAGGTCTCAACTTTCTCTAGGAAGATACTATGTACAAGAGACT
TTCAGTAAATAACCTGTTCTTGTATTGGTTTGGAAACCTATACTACCTTGGACTTGTAAATGGT
TTATATGTATACTTGTTAATATGTGTGAATATGTCTGGAAGAGTGGGGGCAAGGGATTTTTGAG
ATTTTGGTGGTTGGAACTTATCTTTTTTGACTAGAATTTGATTGGTTATTCATACTGATATTAA
ACTGACAAGATATTACCGTGGTGACCATAGTTGAGGCTTGGCTGCTATAAATGAGGTTTAAGGT
GAGTAGGAGCCTCTCTTATGGTTGCTTTCAGGGCTTAATTGTGTTGCATGTAAACATGTTCATA
TTTGTTGTGTTTGGACAAGCTTGTATATGCATTTGACTAGTCTTAAATGTACAAGAGACTACAC
ATGTGTGGTAACTGTATCACCACTTATTTATTGTGAAACATGGTGTACTTGCACTTGATAAACT
CTATACATGAACAAAGACATTCCTATACGTGACCTAAATGTATCAGTAAGTATCTTGTATCTTG
TATTGAATAAGGCTATGGGATGGCGGGGATAATGGAGTTTTTTCTATTAAATCCAATTATGAAA
AGCTTTGGGGCAGTAAGATATCAATTTTTTCATCTTCCAGTGTGAATTCCAAGGGCACCGAGAA
AGGTGGGCTTTCACTTGACTAGAATACATGGTGTACGGGCTACGTCCCGACCACTTCTCTGACA
ACTAAGAATAAGAATTTGACGAACAGGAAGATTACATGTGGCGGTTGGTGCTTGAAGTGTAAGA
AGCTTGCAAGAAGACATGAATCACCTCCTTTTACATTGCTGAAGAGCATCTCGCTTGCGGTTGC
AAATATTGTCATGGTTTGGTCTTTAGTGGGTGGTGCTAGATGCGGTTAAAGAGGAAATATTTAA
TCTTTAGATGAAGAGACGACGTAGAGCATAAATTTTGCTCTACTAGCACTTAAGTGAATCACAT
GGAGAGAGAAAAATGGAAAGCTTTTGATAGAGAAGAGAAGGATTTAGTAAACTTGAGAAGTCAC
TTCTTATACCCATGAGGTTTTTACAATATAGAATTGTTGTTTGTAGAAAACCATATGTTTTTGT
AAGGTTTTCTACTTTTGTAGTCCTTGTAAATGGGTGTTGCCACGTCATTCTATTAGATAATTTT
AATACTTCATATATATAAACAAAAGCAATGGATTGCTTGTACTCACAAAACAGTGAGGCTACCT
ATATACTTGAACTAATACACAGGCAAATTAGATGCTCATAGGTTAGGGGTAGAGCCACCTTAGC
TTATGTGATGTCATCCGTCACTGCTTCATTGGATAGTTTTGCTATACATATGTATATATATATG
ATTAACAAGCAAGATAAAAAAAAATTAGATAAAAGGAATAAATGGCACCCCTTGTTACAATGGA
AGTCTCATGGGATCGATTCTTAGAGCTACTTGTGTGCATCTTTCTGAAAATTATGAGCAATACC
AGGCTTCGCACCTCAGAAGTTGTATTAGTTATTTTCGAGGCTCATACACTACAAAGTCCAACTA
TCACACACCTTAACTACTTCCACGGGATACCTGCTACCTCCCACCAGCACAGGTCCTAGGTAAA
GTCCTTTTGTATATTATGATGTAATTATAGTGAATTGTTCATTTATTTGTTTTTATGCACTCTC
CAAAGGAAGAGCACGAAGAAGCGGTCTACAAGATTCTAATATATATATATATGAAAAGTTCACC
GGGAAAAGATTATTTTTCAGAAAAGGTCAAGATAGAGGCATTGAAAGCTTAACAAATGCAGATT
GGGTAGGTTCTGTTATTGATAAGAGGACTACATCAAGATACTGTACTTTTATCTAGGGAAATCT
TGTGACTTCGAGGAGTAAAAAACAGAATGTTGTAGCCCGTAGCAGTGCTGAAGCTGAATATCGA
TCTATGAAATGATTTGGCTCAAGAAGATGAAGGAAAACTAAAAAAATTGTTTCTGTTACTAATG
AAGTTGAACTGTGACAACAAAGCTGCCATTAAGTATTAATCACAATCCAGTTCAACATGACATA
ACAAAGCATGTTGTAAGATTGAAGAAGGAAACATGTGCATGCCTTTCGCCCCAACAAATCAGCA
AATTGCAGATATTTTTACAAAACACTTGTTTAAACCAAAGCTTAAAATCTCATAAGCAAGTTAG
GCATGAAAGATATTTACATGCCAACTTGAGGGCGCGTGCTGATTTGTAATAAGTTATGATATTA
CATGTTTGCTATATTTTTTAATAAGTTACGATATTAGAATCATCCCATAATTCTCAAATCTCCT
AGAATTAAAGATCTGATTGCTAGCTAGTTTCTTTTTCTAGATTATAAATTTGTATCTCTATGGA
TGAATAAAATTGTACAATTTCGGTACCAAAACTTACACCTTATATATTGACACCGCTTATGAGA
AATCTTACATAAGCCCCTCTATATGGTGGAGCTTACCATATCCAGCCATTCCAGATGTTGGGCT
GGTAGCATATAGGGTCCCTGGCTTCAAGGGATTAGGAGAGCAACGACTAGTTGAAAGACATTCA
ATGAATCCCCAATTGCTATGTTATGTGCAATGTGTACTGAAAGTACCATAGTCAAAAATATATT
AGCTTATATGTGGAACTATGTACTTTTGTATTCCGAACTTGCATATTGCTTGCCCACCTTGGAT
AGAGTAACCATTCACTATTCCTGGTCCGTCCTCTCTTTCACAGCTTAGGAGTACACATTGATAA
GCTTAAGTAAGCCTTTTTTACTAATACACTTTGTTGATGTGGCTCACCCTCTTCTTACATTTTA
CAGACGTTGAATTGGGTTACTATTGAATTGATAATTGCCAATTGGCTTTGACATGTCATCTCGC
GACATCTGTTGGATAACAAATATTTGGATAGTCAGTTGCTTCTAGTATTATATCTGAGATATAC
TTGAGTTTATTATCGAATTCGGCCTACTAGGTGACAATTTTAGGTACCAATTTTAATGCATGTC
CTCAAGGTGACAGAATTTACTTGTATAATATGGAAAAGGAAAAGTAGTAATTGGTAAGCCTGTC
AATCTTGGGGAAAATTTCACCTTCATCAAATTAGTTGAAAGCTGGTTTTAGAGATTTTTCAAAA
ATAAATCACAAAAGAAGTACCCGATGACTGAATTGCTTGGGAAAGAGCTCTGCATGCTGCCATA
GATAGAACAGCATTTCCAATGTGCATCGACTGAAAAAGTTTTTCTAACATTTGCCAGAATACTC
CTAGCAGCGCTACAAGAGGATCATCCACATCCGAACCAGCAGAAGACTCTGTTGACAGATGGCT
GAATACAGTTCCCAACCTGACCAATTGGCCAAGGCTTTACTACATAGAAAGGTATAGGGATGGA
AAGCAAAGACCAGCAAGTAATTCATATAAGTCCTTTACAGAATGGGGAAAAAAAGTTTAGATTC
TTCCCAACCTTTATAGAACTAGTGTTTTTGCAGAATCTACGTCCAATACCTTGTTTTAGACTCT
TTCTGATAATTAAGACAGACTTAGAGAACAAAGTGATAGAAAGTATAGCAGCGAATAATACACG
TGATCATACACATACTGCAGATAAAGTTCTAACAAAAAATAATAGAATTTTGCATCAGTCATGT
GGAGGAAATTGGTTCACTTCTCAAGTAAATGCTCTGTAAGGACTCAATTTTGTATGAAATGTCT
CATACCAGGTTTCACACTTTTGGGAAGAAAAAGAAGGTAAAATTCTATCAGAGTCCTTTTAAAA
ATAGGATGCTACCAGGAAATGTTCAGATGGTGTATTGCTCGAAAGATGGCAGAACATTTCAAAA
TTGGTATGCTTCTGTGCCAATGATAGCCTTGCACTGCAAACTAGAGAGCAGAATAACATAGAAC
ATGGTCTTTGTGAATGTTACACTTTAATTGCTCTCCGTGTCTATGGCATGCAAACCTTGATAAG
AAAAATATCTGAACTAATGCAGATGCAAAAAATAATAGTGTAGCAATAGGTTCAAACCTATGTA
AACCTCTTCTTGCAGCATTAGTCAACTGAGAATAAGAAGCAGGATTATGCCTTAAAGAGTGGTT
TTGATTTTCATCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.133560673
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress
Other Information
References Yang et al., 2020