Detail information of Os10g0567400_circ_g.4


General Information
CircRNA Name Os10g0567400_circ_g.4
ID in PlantcircBase osa_circ_008060
Alias NA
Organism Oryza sativa
Position chr10: 22483668-22485340  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os10g0567400
Parent gene annotation Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chl
orophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Simila
r to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os
10t0567400-03)
Parent gene strand -
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0567400-01:6
Os10t0567400-02:6
Os10t0567400-03:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGAGCTTTTGCCAATTCTTCCTGTAATTCTGCAAGCTCTTTCCTCAAGGTTCCAATTGACTT
GAACTCCCTTGCTAAAGGATTAAGAACCTCTACCACcttctcagcaaaatgtgaccatagtata
tgcatgaaagggacatgcttgatccatggagcgaagtcgagagacatccggtagagcagcctgg
ttttattc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1125
Transcript exons: 22483668-22483962,22484083-22484195,22484308-22484492,22
484633-22484780,22484876-22485154,22485236-22485340
CTTCTCAGCAAAATGTGACCATAGTATATGCATGAAAGGGACATGCTTGATCCATGGAGCGAAG
TCGAGAGACATCCGGTAGAGCAGCCTGGTTTTATTCCTAGAGGAGGGCAAACAGATATGGAGCT
GGTGGAGATGCGTCGAACATTGCTTGGTGCTCTTCCCCTCTAGTTTTCCAGGCTTTGAGATGCC
AATGGTTGACAACACCATGCATGGTGGTCGAAATTCCATGTCGATCGGGTATGGATCCCAGTAT
CCTTGAAGCCCAGATGAAGGTGTCAAGAACTTCACCAAGCTTGGAACACTCCAACCCTTGGCAA
AGGTGGATGTATGAGTAAAAGGAGCATGAGCAAGATCTAATAGATTGTCCAGAAGAAGTCCATG
CTCCACTGGTAGCTCCATCACTATCTCTGCGTGAATTGTAAATCCTGAAGGAGGCAGCAGAGAA
GGGATAGTCGACTTCGGTGGGTCATTGCCAGGCCATATCCAAACCATTCCTTCTTGCTCAAAGC
ATGGTAATGACCGGATGCGCACGTTGAGCATCTTTGTGGATGGCATTTTCTCACATTTTCCATC
AGTTGAATACTCCCAACCATGGTAAGGGCATTGGATTCTGCCCTCATTAACTGAGCCAAGATGA
AGAGGGCAAGCTCTGTGAGCACATGTGTTCATAACACATCCAGGTCTCCCATCCTTTCCTCGGA
AAATTACCCACTGCTCCTCAAAACAATCTATTGGCACCATTGTATCGTCTTTTAGGTCACTGGA
GAAAGCAACTGGGTACCAGAAGTTCTTCAGACTGGGATTGTATGGCTGCACTGGACCAGACACG
TTCAGACTCCGGCGAGGAGGTTTCTTGTTTACAACACGGGACGCTGATGACGTGCTTGGAGCAA
GGGAAGTGCACTCGGCTGTAGATGCGCTAGAGCCTCCATCTTGCAACAGTCTGTCGTTGACAAG
GGTCTCCATTTGTGCCAACTTATCAAGGGCAGATGATACTCTAGTTTCCGACAGATGAACCTGA
TTGTGAGCTTTTGCCAATTCTTCCTGTAATTCTGCAAGCTCTTTCCTCAAGGTTCCAATTGACT
TGAACTCCCTTGCTAAAGGATTAAGAACCTCTACCAC

Genomic sequence CTTCTCAGCAAAATGTGACCATAGTATATGCATGAAAGGGACATGCTTGATCCATGGAGCGAAG
TCGAGAGACATCCGGTAGAGCAGCCTGGTTTTATTCCTAGAGGAGGGCAAACAGATATGGAGCT
GGTGGAGATGCGTCGAACATTGCTTGGTGCTCTTCCCCTCTAGTTTTCCAGGCTTTGAGATGCC
AATGGTTGACAACACCATGCATGGTGGTCGAAATTCCATGTCGATCGGGTATGGATCCCAGTAT
CCTTGAAGCCCAGATGAAGGTGTCAAGAACTTCACCAAGCTGGGAAATGAACATAGCATCAGCA
TGATGATTTCTGAAGACATTTCCACATGGCTATCCATTTTCTAAAAAAAAAAAAAAGAATTCCA
CATGGCTGTGAAAATATATGTATGTAAATACCTTGGAACACTCCAACCCTTGGCAAAGGTGGAT
GTATGAGTAAAAGGAGCATGAGCAAGATCTAATAGATTGTCCAGAAGAAGTCCATGCTCCACTG
GTAGCTCCATCACTATCTGTTGATGATCAAGAACAATTCCATTACTTTTCAGTCCAGTAAAAAT
CTTGAAATGCACAGGACAGTTCCACATAGTATGGTTGCTGCAGCATGACATGATCTCCTTTTAC
CTCTGCGTGAATTGTAAATCCTGAAGGAGGCAGCAGAGAAGGGATAGTCGACTTCGGTGGGTCA
TTGCCAGGCCATATCCAAACCATTCCTTCTTGCTCAAAGCATGGTAATGACCGGATGCGCACGT
TGAGCATCTTTGTGGATGGCATTTTCTCACATTTTCCATCAGTTGAATACTCCCAACCTGAAGG
TTATGAAAACAAAAAAAAACTGAAATACTACTTTCGCAACTTCTCTCTGTTGGCAAATTTTCAT
CTGAAGACTTCAGAAATAAATGCGGAAGCATGCAGAAATGAAAGTTCATGTAAAGCTGTCTTTT
CTTACCATGGTAAGGGCATTGGATTCTGCCCTCATTAACTGAGCCAAGATGAAGAGGGCAAGCT
CTGTGAGCACATGTGTTCATAACACATCCAGGTCTCCCATCCTTTCCTCGGAAAATTACCCACT
GCTCCTCAAAACAATCTATTGGCACCTGAGAATGCGCAAACCACATCAAATAAACATAAGTTTC
TGCAACTGCTAACTCTGACCTCGTAAAAAAATGCCTGAATCGCACGTTGTTTTTACCATTGTAT
CGTCTTTTAGGTCACTGGAGAAAGCAACTGGGTACCAGAAGTTCTTCAGACTGGGATTGTATGG
CTGCACTGGACCAGACACGTTCAGACTCCGGCGAGGAGGTTTCTTGTTTACAACACGGGACGCT
GATGACGTGCTTGGAGCAAGGGAAGTGCACTCGGCTGTAGATGCGCTAGAGCCTCCATCTTGCA
ACAGTCTGTCGTTGACAAGGGTCTCCATTTGTGCCAACTTATCAAGGGCAGATGATACTCTAGT
TTCCGACAGATGAACCTGGATTAGACATGTAAAACATCAGAATCCATATAATATTGAAGTTTTT
CATTTGGCTCCTGTCTCCTGAAAGTACAATACCTGATTGTGAGCTTTTGCCAATTCTTCCTGTA
ATTCTGCAAGCTCTTTCCTCAAGGTTCCAATTGACTTGAACTCCCTTGCTAAAGGATTAAGAAC
CTCTACCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.445611289
Functional Information
Coding potential Y
Potential coding position 22485105-22483670(-)
Potential amino acid sequence METLVNDRLLQDGGSSASTAECTSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYP
VAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWE
YSTDGKCEKMPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMEL
PVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVL
STIGISKPGKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHF
AEKVVEVLNPLAREFKSIGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRL
LQDGGSSASTAECTSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKD
DTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK
MPSTKMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLD
NLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPG
KLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEKVVEVLN
PLAREFKSIGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSAS
TAECTSLAPSTSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCF
EEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKMLNV
RIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAP
FTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQ
CSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEKVVEVLNPLAREFKSI
GTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECTSLAP
STSSASRVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFEEQWVIFRG
KDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSLPCFE
QEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAK
GWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQLH
ICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017