Detail information of Os10g0567400_circ_g.1


General Information
CircRNA Name Os10g0567400_circ_g.1
ID in PlantcircBase osa_circ_008057
Alias NA
Organism Oryza sativa
Position chr10: 22483044-22483173  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method circRNA_finder
Parent gene Os10g0567400
Parent gene annotation Similar to Rieske. (Os10t0567400-01);Similar to Isoform 2 of Chl
orophyllide a oxygenase, chloroplastic. (Os10t0567400-02);Simila
r to Isoform 2 of Chlorophyllide a oxygenase, chloroplastic. (Os
10t0567400-03)
Parent gene strand -
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os10t0567400-02:1
Os10t0567400-03:1
Os10t0567400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCCTATCATTCTCTCCTTCCATTAGCCTTTCCTCTCCAGAACCCAATTCAATCTGCAACGAA
Gctcagattacaattgcatcccgtgatgctgtcgctagtgtacacttaaaattacacagaatga
cg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGATTACAATTGCATCCCGTGATGCTGTCGCTAGTGTACACTTAAAATTACACAGAATGAC
GTCGCCTATCATTCTCTCCTTCCATTAGCCTTTCCTCTCCAGAACCCAATTCAATCTGCAACGA
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.103205256
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017