Detail information of Os10g0567300_circ_g.1


General Information
CircRNA Name Os10g0567300_circ_g.1
ID in PlantcircBase osa_circ_008054
Alias NA
Organism Oryza sativa
Position chr10: 22481085-22481368  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0567300
Parent gene annotation SH2 motif domain containing protein. (Os10t0567300-01)
Parent gene strand +
Alternative splicing Os10g0567200_circ_ag.1 EPlOSAG00000036674_circ_ig.1 Os10g0567300_circ_g.2 Os10g0567300_circ_g.3 Os10g0567400_circ_g.1 Os10g0567400_circ_g.2 Os10g0567400_circ_g.3 Os10g0567400_circ_g.4 Os10g0567400_circ_g.5 Os10g0567400_circ_g.6 Os10g0567400_circ_g.7 Os10g0567400_circ_g.8 Os10g0567400_circ_g.9 Os10g0567400_circ_g.10 Os10g0567400_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0567300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCAAAGTTTCTCAGAGCTGCAGCTCCTTCTGTTAACGAAGATGACTTGATAAAACTTGCAAA
TCAGGTCTCTTTGTATAGTGGATGCACCCATCACAGaataaacatgcaaaaaagatggtgctag
acaaaggagcacaggatgtcatggtgtctgattctacagcatcagattacgacagcatggatgc
aggaagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATAAACATGCAAAAAAGATGGTGCTAGACAAAGGAGCACAGGATGTCATGGTGTCTGATTCTA
CAGCATCAGATTACGACAGCATGGATGCAGGAAGTTCTTGGAGTTTATCAGATGGAGATGATGT
TGAATCCTTTTCGGACGCTGAGATTTTCAGATATTGTTTAGATGGTACACATGAGCGGTCAAAG
TTTCTCAGAGCTGCAGCTCCTTCTGTTAACGAAGATGACTTGATAAAACTTGCAAATCAGGTCT
CTTTGTATAGTGGATGCACCCATCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.204814906
Functional Information
Coding potential Y
Potential coding position 22481104-22481109(+)
22481355-22481109(+)
22481136-22481304(-)
Potential amino acid sequence MVLDKGAQDVMVSDSTASDYDSMDAGSSWSLSDGDDVESFSDAEIFRYCLDGTHERSKFLRAAA
PSVNEDDLIKLANQVSLYSGCTHHRINMQKRWC*(+)
MHPSQNKHAKKMVLDKGAQDVMVSDSTASDYDSMDAGSSWSLSDGDDVESFSDAEIFRYCLDGT
HERSKFLRAAAPSVNEDDLIKLANQVSLYSGCTHHRINMQKRWC*(+)
MTSCAPLSSTIFFACLFCDGCIHYTKRPDLQVLSSHLR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017