Detail information of Os04g0337201_circ_g.5


General Information
CircRNA Name Os04g0337201_circ_g.5
ID in PlantcircBase osa_circ_023428
Alias NA
Organism Oryza sativa
Position chr4: 15869209-15870134  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0337201
Parent gene annotation Similar to OSIGBa0137O04.8 protein. (Os04t0337201-00)
Parent gene strand +
Alternative splicing Os04g0337201_circ_g.1 Os04g0337201_circ_g.2 Os04g0337201_circ_g.3 Os04g0337201_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0337201-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCGAACAGCTGCTATGGACTTTGTGAGTGAATTGGTAAGAAAACGAGGGAAAAGCAATCTGCA
AAAGTTTATCCATTTTATTGTGGAAATATTTATGAGgtttgctgatatgaagcttcagagacca
gaaagcaaagcctttgctcaaatgttccaaaagaactatgctggaaaaattttggggtgccatt
tgcagttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGCTGATATGAAGCTTCAGAGACCAGAAAGCAAAGCCTTTGCTCAAATGTTCCAAAAGAAC
TATGCTGGAAAAATTTTGGGGTGCCATTTGCAGTTGCTCAATGCAATACGTACTGGTGGCTATT
TGCCTGATAGGGTTATCAATCTTATTCTTCAATATCTTACCAACAGGTTTGTGGAAAAACTGTG
CAGCAGCATTCTGTATTTCCTTAGTAGCTCTGTGGTCTGCCTTCGTATTGTTTTTGCCACTCCC
TTTCTCCATTTTGTCTGGTTTTCCGCATGTTTCACATGGTTGCAATCAGTCTTTATCTCAGTTC
CATGACAAATTGCTCTAGTCATCAGATTTGTAATGGCACAACTTCCACTTCATTCATGCAATAT
GGATAATTTTCGCCTGATTTATATTTACATGCCTTTCATTATTTTAGTGTACAGTCAGTATGTA
ATATACGTTTTTTGTTGAGGGGGGGGGGATTCAGTGCTTTCTGAATTCTTTGTGGCTGAATGTA
AGTATTTCTTGCAGTGTCACGAAGAACAGCATGTATCAGCTTATGCAACCACAAATTGACATAA
TTCTATTTGAGATAATCTTCCCATTAATGTGCTTCAATGATAGTGACCAGATGTTGTGGGATGA
AGATCCTCATGAATATGTTCGGAAAGGCTATGGTAATATGTTCATCTAAGCAACTTTTTTTAAA
AAGAATTTGCATTATTTCTTCTCAATGTTCTGCAAGGTAGTATGTGCACTCCATTAGTTTTCTG
TAGCCATGATACTACTTGGTACTTTTGTGTACAGATATTATTGAAGATTTGTATAGTCCTCGAA
CAGCTGCTATGGACTTTGTGAGTGAATTGGTAAGAAAACGAGGGAAAAGCAATCTGCAAAAGTT
TATCCATTTTATTGTGGAAATATTTATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.205659737
Functional Information
Coding potential Y
Potential coding position 15869220-15870131(+)
15869301-15869810(-)
Potential amino acid sequence MKLQRPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPDRVINLILQYLTNSVTKNSMYQL
MQPQIDIILFEIIFPLMCFNDSDQMLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRG
KSNLQKFIHFIVEIFMRFADMKLQRPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPDRV
INLILQYLTNSVTKNSMYQLMQPQIDIILFEIIFPLMCFNDSDQMLWDEDPHEYVRKGYDIIED
LYSPRTAAMDFVSELVRKRGKSNLQKFIHFIVEIFMRFADMKLQRPESKAFAQMFQKNYAGKIL
GCHLQLLNAIRTGGYLPDRVINLILQYLTNSVTKNSMYQLMQPQIDIILFEIIFPLMCFNDSDQ
MLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRGKSNLQKFIHFIVEIFMRFADMKLQ
RPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPDRVINLILQYLTNSVTKNSMYQLMQPQ
IDIILFEIIFPLMCFNDSDQMLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRGKSNL
QKFIHFIVEIFM(+)
MAPQNFSSIVLLEHLSKGFAFWSLKLHISKPHKYFHNKMDKLLQIAFPSFSYQFTHKVHSSCSR
TIQIFNNIIAFPNIFMRIFIPQHLVTIIEAH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017