Detail information of Os04g0304200_circ_g.11


General Information
CircRNA Name Os04g0304200_circ_g.11
ID in PlantcircBase osa_circ_041722
Alias NA
Organism Oryza sativa
Position chr4: 13653273-13653322  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.9 Os04g0304200_circ_g.10
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGCCCCTCCGTGTACTTGCTCACtcgttcggccgcatccgcttgtcgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 50
Transcript exons: 13653273-13653322
TCGTTCGGCCGCATCCGCTTGTCGCTGAGCCCCTCCGTGTACTTGCTCAC

Genomic sequence TCGTTCGGCCGCATCCGCTTGTCGCTGAGCCCCTCCGTGTACTTGCTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.199998667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study