Detail information of Os04g0304200_circ_g.10


General Information
CircRNA Name Os04g0304200_circ_g.10
ID in PlantcircBase osa_circ_041721
Alias NA
Organism Oryza sativa
Position chr4: 13653123-13653313  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.9 Os04g0304200_circ_g.11
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCGGCGGCGGCGGCGGTGCTCACCGTCGTAGCGGATGAGCGACACCGGCAACTCGTTCGGCC
GCATCCGCTTGTCGCTGAGCCCCTCCGTGTAatcgccttgtccttctgcctctctgcgctccac
acacgccaatggcggcattggtaagacaagagaattagagaaacatcgaggaaacagaggatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 92
Transcript exons: 13653123-13653144,13653244-13653313
ATCGCCTTGTCCTTCTGCCTCTCGTCGTAGCGGATGAGCGACACCGGCAACTCGTTCGGCCGCA
TCCGCTTGTCGCTGAGCCCCTCCGTGTA

Genomic sequence ATCGCCTTGTCCTTCTGCCTCTCTGCGCTCCACACACGCCAATGGCGGCATTGGTAAGACAAGA
GAATTAGAGAAACATCGAGGAAACAGAGGATTCCGCGGCGGCGGCGGCGGTGCTCACCGTCGTA
GCGGATGAGCGACACCGGCAACTCGTTCGGCCGCATCCGCTTGTCGCTGAGCCCCTCCGTGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.212479058
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study