Detail information of Os04g0304200_circ_g.9


General Information
CircRNA Name Os04g0304200_circ_g.9
ID in PlantcircBase osa_circ_023361
Alias Os04circ02570
Organism Oryza sativa
Position chr4: 13652366-13654112  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os04g0304200
Parent gene annotation Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Pho
totropin). (Os04t0304200-01)
Parent gene strand -
Alternative splicing Os04g0304200_circ_g.10 Os04g0304200_circ_g.11
Support reads 8/2
Tissues leaf and panicle/shoot
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os04t0304200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCGAGCTGCTGCTGCCCGCCATGGATGCCGATGAGATTGTCCTCGGCTATTTATCAGCGAAG
GTGTAGCAATCTTGGCCGTGCAACCATCGATTCTTGctgcaattccttcccaggatctcttccc
gcgtgtactccgtcagctccaggaagctatccgacgcgaagatctgcacaacccccccacacca
cacccatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 154
Transcript exons: 13652366-13652390,13653984-13654112
CTGCAATTCCTTCCCAGGATCTCTTATCCACTTCTCCACCGCGTCGACTATCTCCTTCGAGCTG
CTGCTGCCCGCCATGGATGCCGATGAGATTGTCCTCGGCTATTTATCAGCGAAGGTGTAGCAAT
CTTGGCCGTGCAACCATCGATTCTTG

Genomic sequence CTGCAATTCCTTCCCAGGATCTCTTCCCGCGTGTACTCCGTCAGCTCCAGGAAGCTATCCGACG
CGAAGATCTGCACAACCCCCCCACACCACACCCATTCTGTCAGTCACCACCAGCACACGCAAAC
ACGCCGGCGACCGGCGAGAAGAAGAGACCGGCGGCGGCGAAGTGGCTGCTTACGATGGGGTTGT
CCGGGATCCTGGGGTCGGTGATGACGAAGTTCTTCTCGATGCGCTCCAGCGTGGTGGCCAGGTC
GATCCCCTGCCGGATGTCCTTCTCCCGCTCCGCCCGCTCCCAGCTGTCCGTCCTCTCCACCACC
TCCGGCGCCGGCGGTGGCGCCGGCGCCGGCTCCTCCACCACCGCCGGCGCCTCCCTGCTCCCCA
CCGAGCTCCTCTTCCCGATCTTGAACCTGCCAAAGCATGGACAGACACAACTCTCAGTGTCACT
GCCGTCCCGGCAATCTGTCGAACAGGTGGGGTGCGAGAGTCTGACCCCATGAGGGAGGAGCGGC
CGGACTTGCGGCCGCTGGCGAGCCGGCTCAGGCGGGACTCCTCCTTCTTCAGGTCCCAGAGCGG
CGACTTGAAGGACCCGGCTCCTCCTCCTCCGCCCGAGGGAGTGCCGGGTGCCACGACCGGCGAC
ATGGCGGCCATCTTGTCCGCGTCGCTCATCTTGGGCGGCGTCAGCAGCGCCGCGTCGGCCGGCG
CGCGCGCCCCGCGCGGCTGCTTCACCGTCTGCACCACCTCCGTCATCGACGACATCGCCTTGTC
CTTCTGCCTCTCTGCGCTCCACACACGCCAATGGCGGCATTGGTAAGACAAGAGAATTAGAGAA
ACATCGAGGAAACAGAGGATTCCGCGGCGGCGGCGGCGGTGCTCACCGTCGTAGCGGATGAGCG
ACACCGGCAACTCGTTCGGCCGCATCCGCTTGTCGCTGAGCCCCTCCGTGTACTTGCTCACCTC
CACCTGCATCCTGTTCGCTCATACCCGAATCAGAATCGCAGCCCAGAACTCGAATGCAAAGCTC
ATCTCATCTCATCAATGGCGACGAACGACTAGTGCTTCGCTTACTTACCCGATGAACTTGATGA
CCTTGCCGTTGTCGTCGCGGATGGGGGTGACGGTGAGGAGGTTCCAGAACGGGGCGCCGTCCTT
GCGGTAGTTGAGCAGGCGGCCGCAGAAGCTGCGGCCGTGCTTGACGGCGTCGCGGATCTTGGCC
ACCTCGGCGGCGTCGGTGTCGGGGCCCTGGAGGAAGCGGCAGTTGCGGCCGACCACCTCCCTGG
GGGAGTAGCCGGTCATGGTGAAGAACCCCTCGCTGGCGTAGATGATGGGGCAGTCCGGGCGCGT
CGCGTCGGACACCACGAACGTCTGCTGCAGGCTCGACAGCGCGTCCTTGAGCTCCTGCGACACC
CGCGGCAGGGAGTCGTGCGACGCGCGCCCGACGCCGCCGTCCACCGACGACTTGCCGCTCCCCG
TGCCGCCGCTGTCGCGCCCCGCCGTCGCCGGCGCCACCGGACGCCACGCCTGCTGCTGGTGGGC
GCCGCTGCTTCCGCTAGGCGCATCCTCGGCGACGATCTCCAAGCCGGCGGTGGCGCCGCCGCCG
CCGGAGGTGGGGAACGCCATCCACTTCTCCACCGCGTCGACTATCTCCTTCGAGCTGCTGCTGC
CCGCCATGGATGCCGATGAGATTGTCCTCGGCTATTTATCAGCGAAGGTGTAGCAATCTTGGCC
GTGCAACCATCGATTCTTG
Conservation Information
Conserved circRNAs osi_circ_005374* osi_circ_014217
PMCS 0.283463566
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017