Detail information of BGIOSGA012245_circ_g.1


General Information
CircRNA Name BGIOSGA012245_circ_g.1
ID in PlantcircBase osi_circ_004677
Alias 3:8532344|8534408
Organism Oryza sativa ssp. indica
Position chr3: 8532344-8534408  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012245
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012245_circ_g.2 BGIOSGA012245_circ_g.3 BGIOSGA012245_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012245-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAGCAAAAGCCAAAATTCTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCA
GAAGATGTTGCTAGACAATTACATGCTGTTCAGGAGcttaacgcagacaagagtccttttcaac
gaacatatgctgcccaggtactttgctcgtttatcttttttttatcacttatgttatgttatgg
ctgagact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAACGCAGACAAGAGTCCTTTTCAACGAACATATGCTGCCCAGGTACTTTGCTCGTTTATCT
TTTTTTTATCACTTATGTTATGTTATGGCTGAGACTAATTGATAAAAAGCTTTTTACAGCATGT
TGAAACTGTTATTCTCCCCTTGTTCTTATATAGCCCTTTCAGTAATGAACTAGAGTATTATCTA
TTGAGATTTAAAAATTATAAGATGTGACATTGGTATAAATGAGGAAAAAGTCCAAATATCCCCC
CTAAACTTTGAATGAAAGTCCATCTAGTACACTAAACTTTAAAACCGGACATCTAACCCCCTGA
ACTTTGTAAAACTGTTCATATTTCTATCTAAAGTTTAGGATGGTATTTGGACTTTTTAAAGTTT
AGGGTGCTATATGGATTTCTATCTATATAGTATATCTCATGTTCATAGTTTTCATTACCTTACT
GCCTTATGTTAATTTTCCCTGTTTTCATGCTGGGATCTACTCGTTGTGCAGATAAAAAGGTGTG
GTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTGGCATATCAACTTC
TGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGGTGTGTCAATCGAATGGATTT
TTCCTGATTGCATGCAGAATATAAATCTAGTATTATTTTAACACTTTTGAATAACAGATAAAGC
TTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGTTAAAGCGGACCTA
CAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGTATGACTCTGTTATCTTCAGTATACT
TTCATGAATATTGTCAACATCATGTTGAACTTGAGATATAGAGTGTCTGTTAGATCTTTTGCAA
ACCACTTGTTTCCATTCCTGGTTCCTCACATTGTTGCCAGAACAATACTATATCAAATTGCCAC
TATCTTAACTCCAAATGATTTCACCCATGGGGTAATGTGCACATATTTTTACAGTACACTCTCT
CTCAAGTCATGGTCATACTACACATGTAGTACCTAAGTAGCCTGTTTCTCTCGCCAATCTGCTT
TTTGCTGACTCGTTATTTATTATTATTTTCTTTCATTTTCAGGCTGGTGAATTTTTCTATTCGG
CTCAAAGAAGTGCTGCGGCGCAACAGAGAGAAATGGAGGCAAATCAATCTGGTGAGAGTTCACT
GGAGAGCCCTCTGCTGGAGCAGGTAAAACTATCATACTGCTCCTCCCTGTACATGGACATTCAT
GTAGTACCATTGCCATGATGTGCCTCAAGATTGATGTTGACTTTCAAATTTTAAACACACAACA
TCCCATATTGTAGTAATAACTTTAATCATTCACAAATCTCAGAGCACTTTGGATTTACAGGATA
GTACATGGACCATACATGCATATACGTGTGTAATTGCAACCCCCACCTTTTTTTTTGTTTTCTG
TTTGCCTCTCTGATATGATCTTGGTTACCCTTTTAGGATACGTTAACAGATGCATCAAAACAAG
TGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTTTTGAACGCATCTT
ATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGAACCTGTCACTGAC
CCAGTCTCTGGAGAAAAGGTTGCTGTTATATTTTCTGACGTTTACAGTGCATTTTTTGTTCTTT
GTATATTCCACCATGTTGTCCTTTCAAAGTAATCTTGGTATTTGGATTATACATCTCGGTTCAT
TTGCGCCCTGATAAAAAGAACTTTGTTCTATGAGTGATGAAGTTATTTTTTATATATCTTACTT
CCTGTCTAGTCATGAAGTTATTTTATTATTTGTTCCAACTCTAAGTCTTCATTCTTTGTATGAT
AACACAGGTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATT
CTGAAGATATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAAT
TACATGCTGTTCAGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8532862-8534405(+)
8534342-8532843(+)
Potential amino acid sequence MARKLRFFKEQMSKAGISTSAQLTEISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNELLEY
STVLQKAGEFFYSAQRSAAAQQREMEANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKE
KAMAFERILFRATRGNIFLRQESVDEPVTDPVSGEKVAKNAFVIFYSGDRAKAKILKICDAFNA
NRYPFPEDVARQLHAVQELNADKSPFQRTYAAQIKRCGEMARKLRFFKEQMSKAGISTSAQLTE
ISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQREM
EANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQESVD
EPVTDPVSGEKVAKNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLHAVQELNADKSP
FQRTYAAQIKRCGEMARKLRFFKEQMSKAGISTSAQLTEISLDFDDLEIKLGELEAELAEVNAN
NEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQREMEANQSGESSLESPLLEQDTLTDASK
QVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQESVDEPVTDPVSGEKVAKNAFVIFYSGDR
AKAKILKICDAFNANRYPFPEDVARQLHAVQELNADKSPFQRTYAAQIKRCGEMARKLRFFKEQ
MSKAGISTSAQLTEISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNELLEYSTVLQKAGEFF
YSAQRSAAAQQREMEANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKAMAFERILFR
ATRGNIFLRQESVDEPVTDPVSGEKVAKNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVAR
QLHAVQE(+)
MRSTQIATHFQKMLLDNYMLFRSLTQTRVLFNEHMLPR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021