Detail information of BGIOSGA012245_circ_g.2


General Information
CircRNA Name BGIOSGA012245_circ_g.2
ID in PlantcircBase osi_circ_004678
Alias 3:8532843|8534025
Organism Oryza sativa ssp. indica
Position chr3: 8532843-8534025  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012245
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012245_circ_g.1 BGIOSGA012245_circ_g.3 BGIOSGA012245_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012245-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTTTTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTT
GATGAACCTGTCACTGACCCAGTCTCTGGAGAAAAGataaaaaggtgtggtgaaatggctcgca
aattaagatttttcaaagaacaaatgtccaaagctggcatatcaacttctgcacaattaactga
aatttcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAAAAAGGTGTGGTGAAATGGCTCGCAAATTAAGATTTTTCAAAGAACAAATGTCCAAAGCTG
GCATATCAACTTCTGCACAATTAACTGAAATTTCGTTGGACTTTGATGATTTGGAGGTGTGTCA
ATCGAATGGATTTTTCCTGATTGCATGCAGAATATAAATCTAGTATTATTTTAACACTTTTGAA
TAACAGATAAAGCTTGGAGAACTGGAAGCTGAACTAGCTGAAGTTAATGCAAACAATGAAAAGT
TAAAGCGGACCTACAATGAGCTGTTGGAGTACAGTACTGTTCTTCAAAAGGTATGACTCTGTTA
TCTTCAGTATACTTTCATGAATATTGTCAACATCATGTTGAACTTGAGATATAGAGTGTCTGTT
AGATCTTTTGCAAACCACTTGTTTCCATTCCTGGTTCCTCACATTGTTGCCAGAACAATACTAT
ATCAAATTGCCACTATCTTAACTCCAAATGATTTCACCCATGGGGTAATGTGCACATATTTTTA
CAGTACACTCTCTCTCAAGTCATGGTCATACTACACATGTAGTACCTAAGTAGCCTGTTTCTCT
CGCCAATCTGCTTTTTGCTGACTCGTTATTTATTATTATTTTCTTTCATTTTCAGGCTGGTGAA
TTTTTCTATTCGGCTCAAAGAAGTGCTGCGGCGCAACAGAGAGAAATGGAGGCAAATCAATCTG
GTGAGAGTTCACTGGAGAGCCCTCTGCTGGAGCAGGTAAAACTATCATACTGCTCCTCCCTGTA
CATGGACATTCATGTAGTACCATTGCCATGATGTGCCTCAAGATTGATGTTGACTTTCAAATTT
TAAACACACAACATCCCATATTGTAGTAATAACTTTAATCATTCACAAATCTCAGAGCACTTTG
GATTTACAGGATAGTACATGGACCATACATGCATATACGTGTGTAATTGCAACCCCCACCTTTT
TTTTTGTTTTCTGTTTGCCTCTCTGATATGATCTTGGTTACCCTTTTAGGATACGTTAACAGAT
GCATCAAAACAAGTGAAGCTTGGATCATTGAGTGGTCTTGTACCAAAGGAAAAGGCAATGGCTT
TTGAACGCATCTTATTCCGTGCCACGAGGGGAAACATTTTCCTCAGACAAGAGTCTGTTGATGA
ACCTGTCACTGACCCAGTCTCTGGAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8532912-8533541(-)
8532862-8534022(+)
Potential amino acid sequence MPALDICSLKNLNLRAISPHLFIFSPETGSVTGSSTDSCLRKMFPLVARNKMRSKAIAFSFGTR
PLNDPSFTCFDASVNVSCSSRGLSSELSPD*(-)
MARKLRFFKEQMSKAGISTSAQLTEISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNELLEY
STVLQKAGEFFYSAQRSAAAQQREMEANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKE
KAMAFERILFRATRGNIFLRQESVDEPVTDPVSGEKIKRCGEMARKLRFFKEQMSKAGISTSAQ
LTEISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQ
REMEANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQE
SVDEPVTDPVSGEKIKRCGEMARKLRFFKEQMSKAGISTSAQLTEISLDFDDLEIKLGELEAEL
AEVNANNEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQREMEANQSGESSLESPLLEQDT
LTDASKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFLRQESVDEPVTDPVSGEKIKRCGEMA
RKLRFFKEQMSKAGISTSAQLTEISLDFDDLEIKLGELEAELAEVNANNEKLKRTYNELLEYST
VLQKAGEFFYSAQRSAAAQQREMEANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKA
MAFERILFRATRGNIFLRQESVDEPVTDPVSGEK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021