Detail information of BGIOSGA012245_circ_g.4


General Information
CircRNA Name BGIOSGA012245_circ_g.4
ID in PlantcircBase osi_circ_004679
Alias 3:8534271|8536186
Organism Oryza sativa ssp. indica
Position chr3: 8534271-8536186  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA012245
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA012245_circ_g.1 BGIOSGA012245_circ_g.2 BGIOSGA012245_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA012245-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTC
TATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGgttgccaaaaatgcatttgttattttct
actctggggatagagcaaaagccaaaattctgaagatatgtgatgcgttcaacgcaaatcgcta
cccatttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGA
TATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGC
TGTTCAGGAGGTCAGGTCTTGGAAATGTGATTTGTTAATATTCTTTGATGAAATTCTTTCTAGT
ATTTCGAAATTTAGATATAGTCCTGAATTGCTTTCAGAAGGTAGTGAGGATGCCAACCGTTGAG
AGAATCATCTGCACGAGTTGCCCTTTATGGACATTCTTGTGCTTTGCTTGTGATATGTCCAATG
TTACCATCCCTATTCTGATGTCACTGCTGTCATTTCAATTTCGAATTTGAAAAATGTTAATTAA
TTATTATAGATTTATAATAGCTAGACTTTGTTCTGTGCCTTCCAATCATTACTTTTGCTGTTGG
TGACTAATGAAAATGATTTGCTGCTATTGCATCTTGTTTGCACCATACGGAGATATGTCATTGG
GAGAAACTTGTTTTGCAGTTGTACTACTATGAATTTCAGTCAATAAACATATAAAGTCTATGCT
TATGAATTTACAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCA
CATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGTAAGCT
ATCCTCTTATGTGATGAATTCCATATGTTAGAAAATTCCGAAATCCACCAGTCAGGTCATTATT
TCAGTTCTATATATATGATACTAATTAGCATACAAATGCTCCAGGCAAATAAGGAAAAAATAAT
TTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGG
AGTCCAGTTTTTGCAACAACTCAGGTAATTGATACACCACCCTGGTGCTAACAATTTATTAGCC
TACTGTTTCCATTTGTTTATTTGGGAGATTATTCTTCATGTGATCTCAATGATTTACAACTTTA
TTTTGCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAAT
TTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCG
GCTTTCCAGGAAATTGTTGATGCATACGGGTATGTTTCAGAGGGCTCTGAGATGCTACTTTTGG
TTTCTCTTTTGGCTTTGGAACTGAAAATAATATATTTTCTTGTGGGTTGTTCCAAGTTGTTTAT
AGCACCATGGGATATGAGACTTCTATTATTGTCCCCCCGCTTTTGGTTTCATCTCAGAAATGAT
GCTCTTTTCACCATTCTTTTGCTGGACTCACTATTTTCATGTGAAATCGACAAACTTTTGGTTC
GCTTAAAGAAAAGAAAGGAAAATTGCCATAATTCACTGTTCCTCTTCAATAGGCAAAGACATGC
CATCATTCCCTGTTATTTGCTCCTCAATTGTGCATTCTAAGTGAAACATTTCCTTTTTTGTTTC
CCTTTTGTGGACATGTCTACCACGTTGAAATCATTGTGTTCATATTGTCAAAGAAGCACTTAAA
CTTGCAATAGGAATTTCCAGAATTTTTGTGCTTATGGGAAATATATTATTTTATCTGAATAAAA
TTAGCATTGACTCCTGAAAAATCAATAAAGAGCTTGCTGTTTGTTTGGGCCAAATGGTTTAGTT
AGGAACTGCTAACTTTGTATTACATCTGATACAGGATAGCCAAATATCAAGAAGCAAACCCTGG
TGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGA
ATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAG
Conservation Information
Conserved circRNAs osa_circ_018877*
PMCS
Functional Information
Coding potential Y
Potential coding position 8534288-8536103(-)
8534900-8536183(+)
Potential amino acid sequence MHFWQPVKQISSLGLSDRVSKPICKFHVPNLQT*(-)
MGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDAL
QRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVTFPF
LFAVMFGDWGHGICILVSTLYLIIREKKFASQVAKNAFVIFYSGDRAKAKILKICDAFNANRYP
FPEDVARQLHAVQEVSAKISELKATIDMGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNML
SVDVTKKCLVGEGWSPVFATTQIQDALQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAF
QEIVDAYGIAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICILVSTLYLIIREKKFASQVAKNA
FVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLHAVQEVSAKISELKATIDMGLAHRDNIL
KNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDALQRATLDSKSQ
VGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVTFPFLFAVMFGDWG
HGICILVSTLYLIIREKKFASQVAKNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLH
AVQEVSAKISELKATIDMGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLV
GEGWSPVFATTQIQDALQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIA
KYQEANPGVFTIVTFPFLFAVMFGDWGHGICILVSTLYLIIREKKFASQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021