Detail information of 5_circ_ag.13


General Information
CircRNA Name 5_circ_ag.13
ID in PlantcircBase ath_circ_038714
Alias At_ciR197
Organism Arabidpsis thaliana
Position chr5: 5583071-5585938  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 AT5G16970_circ_g.1 5_circ_ag.2 AT5G16970_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.14 AT5G17000_circ_g.1 AT5G17000_circ_g.2
Support reads 28/17
Tissues leaf/root, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTCCTTTGGAGAACAAACTT
CATAAAACCCAGCATAGGCAGTCATACCAGGCATACcgagaagtccagtatagtaggataatgg
aacatctgtatgttggatcttgaaatgcatgtgagccattggtgtaataacactatactcctcc
catccaac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 855
Transcript exons: 5583071-5583253,5583628-5583863,5585188-5585363,5585548-
5585681,5585779-5585904
CGAGAAGTCCAGTATAGTAGGATAATGGAACATCTGTATGTTGGATCTTGAAATGCATGTGAGC
CATTGGTGTAATAACACTATACTCCTCCCATCCAACTATTCCCCAGAGTAAATCACCTTTCTTG
TAATCTGGATGCCCAGATTCTATCACTCTAGACACTCCATACCCATAGATTGGCTCTTGCCGGG
AGCGTAAGCTTGAGCAAGAGCAGAGGAGGGATCAGGTTTCCCCATGCGAGACCGCATATAAGGA
TCGCATGACAGGTAGAGATTCTTCACAAGAACCGATTTAGAACCTTCCGGAACCCTAAGTTCGA
CGGTGGTGGTGGTGAAATTGAAATCGGATTCCTTAGGGAAACCACTCACGTGGTCTTTGAATAT
GACCTGCTTGTTCGTCGTCATCGTTGTTATTCTCCCTTTTGTAGATTATGTTGGATAGGTTGTG
TACACCTTCTTGGTTTTCAAGATTGTACTGTGAGATCATTCCACACACAGCGATACGTCCGTGT
GGGTTCATGTTTAATAGCACTGCGTCTAGCATTTTGCCTCCTACGTTTTCAAAGTATATGTCAA
TGCCTGTAGGGAAACACCTCCTAACAGTTAAAGACATCAAGCGCTTAGAAATAAGTAGTTCACT
GAACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCTTGTAGTTAAATGCATCATCAAACCCA
AACTTGGTCTTCAGAAGATCAACCTGTACTTCCGGCGCTTCCAACAACATAACAGCCCATCATC
TTAGCAAATTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTC
CTTCCTTTGGAGAACAAACTTCA

Transcript length: 887
Transcript exons: 5583071-5583253,5583628-5583807,5585148-5585363,5585526-
5585681,5585770-5585921
CGAGAAGTCCAGTATAGTAGGATAATGGAACATCTGTATGTTGGATCTTGAAATGCATGTGAGC
CATTGGTGTAATAACACTATACTCCTCCCATCCAACTATTCCCCAGAGTAAATCACCTTTCTTG
TAATCTGGATGCCCAGATTCTATCACTCTAGACACTCCATACCCATAGATTGGCTCTTGCCGGG
AGCGTAAGCTTGAGCAAGAGCAGAGGAGGGATCAGGTTTCCCCATGCGAGACCGCATATAAGGA
TCGCATGACAGGTAGAGATTCTTCACAAGAACCGATTTAGAACCTTCCGGAACCCTAAGTTCGA
CGGTGGTGGTGGTGAAATTGAAATCGGATTCCTTAGGGAAACCCTCGTAGAAATCAAACACTGC
AAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCTTGGTTT
TCAAGATTGTACTGTGAGATCATTCCACACACAGCGATACGTCCGTGTGGGTTCATGTTTAATA
GCACTGCGTCTAGCATTTTGCCTCCTACGTTTTCAAAGTATATGTCAATGCCTGTAGGGAAACA
CCTCCGCTTTCTTATGTAAACCGATCCTAACAGTTAAAGACATCAAGCGCTTAGAAATAAGTAG
TTCACTGAACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCTTGTAGTTAAATGCATCATCA
AACCCAAACTTGGTCTTCAGAAGATCAACCTACCTTCTCTGTACTTCCGGCGCTTCCAACAACA
TAACAGCCCATCATCTTAGCAAATTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACA
CATAAACTGTCTCTCCTTCCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGC

Genomic sequence CGAGAAGTCCAGTATAGTAGGATAATGGAACATCTGTATGTTGGATCTTGAAATGCATGTGAGC
CATTGGTGTAATAACACTATACTCCTCCCATCCAACTATTCCCCAGAGTAAATCACCTTTCTTG
TAATCTGGATGCCCAGATTCTATCACTCTAGACACTCCATACCCATAGATTGGCTGCACCAAAA
ACACACAATGCAACAACAACAGTCAACACGAGAGAAAGCAAAAAACACAAAGAGACAAAATTTA
TTGTCAGAGTCTTCTTCAAGAACCCCAATCTGAAGTTTTTATACCATTGTCATCTAGTTTATAT
AAATAAGAAGCATCCTGATTAATTTAAGTACAGAAATAATCCAACATTAAACTAGAACAGTTGA
TCCGTTTGTTATATAATAAGACATCATTCTGGTCACAAAGTATAATTTATTATATCTCAACATA
TAAAACCAAACCAAACAAAACAAAACAAAACAAAACATTTTCATCCGATTTGAATTTCACCGGA
GATCTTCCTAATCGGAGATTAAAAGTAGATCCTCGTCGTTCATACCTTGCCGGGAGCGTAAGCT
TGAGCAAGAGCAGAGGAGGGATCAGGTTTCCCCATGCGAGACCGCATATAAGGATCGCATGACA
GGTAGAGATTCTTCACAAGAACCGATTTAGAACCTTCCGGAACCCTAAGTTCGACGGTGGTGGT
GGTGAAATTGAAATCGGATTCCTTAGGGAAACCACTCACGTGGTCTTTGAATATGACCTGCTTG
TTCGTCGTCATCGTTGTTATTCTCCGATTCAACTTCTGATTTCCACCAATTTGTTACTTCTTCT
TCTTCTTCTTCGAGGACGCGCCTGCTTTTTATAGTGGCCTCTCACTCGTAATATCAAGTATGAA
GTCACTGCTCATGATGATTCATCACAATATGTTCACAATTTTTAAACTCTTTCGAGCGTTTTTA
TTGTTGACACTTTCACATTTTGTGATATATTTTCATTTCCTTTCACATTTCATTTTCTTTCCAA
TTCTCTCTTCTGTCACATTTTCACAAGAGTTGGTGTTTATACATTACTGATATAGGAAAAGGAT
GGTGATAAATGAGTGACACGTGGACGGTGGTAATTGAAGATTAAAAGCAACGGTCAATATTAAG
AACAGAAGAATGAGGTCAATAAGAAGCTGAAGACACTTCATTATGCTAAAATCTGAGATTGTAT
CTTCTTCTTCATTTTGTTCTCTGTTACTACTTGAGAATTCTCTGTAATTCTCAAGCTATTCCTC
ATCGTTTACCGGAGCTTCTCTCTTGAGACTCTTGTAGATGAGAAGTTGATGTTGCGTTTCATGA
ACGTCGTATCAAATTATCAATCTATATCTTTCGAATCCATTTTCCTCTTTATTATCTGATTTAC
GTTATCAATTACAAAAGAACACACCTCATCGTTTTAGAGACATTTGGCTTCAATTTCCTCAAGT
GTCAAGTGTGGTCCCTTTGTCTCTGGAACATCGAAGATTCTTAAGACCAGAGACAAAACACATA
TCACACCAAACCCACAAAACAGTATCCCAGCTCCAAATAGTTCTCGCAAAACAGAGCCATGTGA
TTGTTAATCGTGATGTCCTCTAATAAAGAAGAAAAGGAGTTGCACAAATAGCAACACTAACTTA
ATTACATTTTTGAATTTGTGAGAGGGGTTTGAGATTGTTTGTTACTACCTTGATACATTTGAAT
TTGATAAACAAGTCACACAGAAAATGATTCAAAACCATAACGAACGAACAAATTGATACATATT
AAAAAATTACTTGAATTACTAGTAATCTAGTATTTATAAACCAAAACCTCAGGCTTGGATTCGA
ACACCCATACAAAATCTTTTGGATACATACAACATTACTCCCATAGATATATATATTCACTCAC
GAGCAATAACAACAACTTGTTTTCCAACGTTCTTACCATGGAAGAGTCCCACAAGAGCTTCAGG
ACCTTTCTCAAGCCCATCAGCTACATCTTCCACGTACGTGATCTTCCCTTCTTTAATGTGCGGA
AGCACAAAATCCAAGAACTTTGAGTATTTCTCGTAGAAATCAAACACTGCAAAGCCTTGAATGC
GGATTCTTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCTTGGTTTTCAAGATTGTACTG
TGAGATCATTCCACACACAGCGATACGTCCGTGTGGGTTCATGTTTAATAGCACTGCGTCTAGC
ATTTTGCCTCCTACGTTTTCAAAGTATATGTCAATGCCTGTAGGGAAACACCTGCAAAAGATAA
AGGAGAGAGAATGTCTCTTAGATTAGTCAAACAGCAGTTGATAAACCTTAGATTACTCATTGGT
TTGACCAGCCTGTTGTCAAGGCCGGCTCTGGATCATGGTGTTCATGCTTTGATCAATTTCTTTT
GTTTCTACTTTAGTTGTGAATTGCCGCTTTCTTATGTAAACCGATCCTAACAGTTAAAGACATC
AAGCGCTTAGAAATAAGTAGTTCACTGAACCTTTTGAGGGCAGCACTAAGGTCTGGTTCTTCCT
TGTAGTTAAATGCATCATCAAACCCAAACTTGGTCTTCAGAAGATCAACCTAGCAAATCCCGAA
AAAGGAAGTAATTGGGCAAGTCATTCTCCTGAAGGAAAACCAAGAAATAAAAGGATACAAATTG
TCCATCATCTCACCTTCTCTGTACTTCCGGCGCTTCCAACAACATAACAGCCCATCATCTTAGC
AAATTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTCC
TTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.717306101
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR866-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017