Detail information of Os09g0515800_circ_g.7


General Information
CircRNA Name Os09g0515800_circ_g.7
ID in PlantcircBase osa_circ_039842
Alias NA
Organism Oryza sativa
Position chr9: 20088680-20088817  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os09g0515800
Parent gene annotation RabGAP/TBC domain containing protein. (Os09t0515800-01)
Parent gene strand -
Alternative splicing Os09g0515800_circ_g.1 Os09g0515800_circ_g.2 Os09g0515800_circ_g.3 Os09g0515800_circ_g.4 Os09g0515800_circ_g.5 Os09g0515800_circ_g.6 Os09g0515800_circ_g.8 Os09g0515800_circ_g.9 Os09g0515800_circ_g.10
Support reads 2
Tissues pistil
Exon boundary   No-No
Splicing signals   CC-AA
Number of exons covered Os09t0515800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAACGTACTCAAGTCTTTTCCTCGTCAGAACACCTTCTCTTCTATCTGCATTAGGTGGTGC
ATATCcctgtcgaagcatattaatctcttcatcagagcgttcagtatcaggaatatcatagtat
tgagaaacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTCGAAGCATATTAATCTCTTCATCAGAGCGTTCAGTATCAGGAATATCATAGTATTGAGA
AACACATTCAACGTACTCAAGTCTTTTCCTCGTCAGAACACCTTCTCTTCTATCTGCATTAGGT
GGTGCATATC
Conservation Information
Conserved circRNAs NA
PMCS 0.334537923
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017