Detail information of Os08g0199300_circ_g.5


General Information
CircRNA Name Os08g0199300_circ_g.5
ID in PlantcircBase osa_circ_036285
Alias NA
Organism Oryza sativa
Position chr8: 5747836-5749803  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os08g0199300
Parent gene annotation Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA b
inding domain TGS (Fragment). (Os08t0199300-01)
Parent gene strand +
Alternative splicing Os08g0199300_circ_g.1 Os08g0199300_circ_g.2 Os08g0199300_circ_g.3 Os08g0199300_circ_g.4 Os08g0199300_circ_g.6 Os08g0199300_circ_g.7 Os08g0199300_circ_g.8 Os08g0199300_circ_g.9
Support reads 12
Tissues seed
Exon boundary   No-No
Splicing signals   CA-GG
Number of exons covered Os08t0199300-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATATGCCCCCGGATGAA
GCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGGttgggttaccaaatgttggcaaatccac
tttctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcgac
ccaaatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGGTTACCAAATGTTGGCAAATCCACTTTCTTTAACATAGTAACAAAGCTGTCTATCCCAGC
TGAGAACTTCCCTTTCTGTACCATCGACCCAAATGAGGCACGGGTATATGTTCCAGATGAGAGA
TTTGATTGGCTTTGTCAACTTTACAAGCCAAAGAGTGAGGTTTGTTTCTTTCCTACACTATAAT
GTGCAACTTCTTTTCTTATGTTTCAAGACATATCATGTCTTCTGAATTTCTTTGCAGGTGTCTG
CATATCTAGAAATCAATGACATAGCCGGGCTTGTTAGAGGAGCCCATGCTGGGGAGGGTTTGGG
CAATGCCTTCCTATCCCATATACGCGCTGTTGATGGAATTTTTCATGTATTGAGTATGTTCCTG
TTACTTATCATTTTGATTGGATCTTGCATATTGAGTGTGTAGTCATGGACTTGTGCTATTGTTT
CAGTGTGAAGCAAAGTAAACGTTGTGATTGTTCTAGTGAAAGCATTGGTGCTCAGATTCGAATC
AATTTTCTTTGCTTTTTTGTTTAACCAGTAATCACAAGGTCATGCACTTCATGAATGCTGCTTA
TGTTTATCAGGAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTTA
GAGATTTGGAAACTATTGGTGAAGAGCTGAGACTCAAGGTTTTTATAGGGATGCTTGATTTGCA
CGTCAGTAAATGCTTTGGTTAAACCTTCTTTTAAATCCTATCGCACTTTCTTTTGCAGGACATT
GAGTTTGTGCAGAACAAAATTGATGACCTTGAGAAATCAATGAAGAGAAGCAATGATAAGCAGC
TGAAACTCGAGCATGAATTATGTGAGAAGGTGGGGCACCTGTTACAGCCAACCTCTGTGTTGCT
AAATTTGTCTGTTAGCAGCCTTGCATAATTTCAAATTGTTATTTTCTTGAGTGAGTGGAAGCTT
ACTTTTGGCTTCTCTTCCTAACAGGTCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTTG
GAGATTGGAAAAGTGCTGACATTGAGATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAGT
TGTCTATTTGGTACGTATTTTTGTCATCTGTATGCCAGTTTATTTGAGATGTTATAAAGTAGTT
TTCATGATGAGGTGTTCAGTTGTTCTTTGTGAGATTTCAGTTTTGTTATTTTCGTGCTTCTGCA
TTTAGAGACTCAGTAATAATGTCAGTACGTTGATTCATGGCTATACATGCTTTTGAATTTATAC
AATAGTGCCCATGAATAGCGCATATTGTTTTCTATTAGCAAGATAAACTTGGAATAGTGCAAAA
CTTATCCTGTGGACTTTCTGTTGTGCCCTGTTTGTCTGTTTCAGTCTTCCTCCTATTATGTAAT
GTTTATTTTGAGGCATCAAGCAATATTCTGAAGCAGTGAATAATACTTTCTTGTTTTATGTATG
GGAACTCTACCTATATATCATTTTCAGAGCACACAATCAACTATAACCCAAATAGTCACTAATC
GTGTAATTAGCTGTATACCCACCTAACCTAACATGGATATTTTAGTTGACCTGTCAGAAATTGA
AAGGGAGATGCTAGTATGTTACCTTTCCTTGCATATGGTAATTTTTTTTTAATAAAAGTAGAGC
TATATATTGTTTAATGACTGTTTTGTTTTTGCAGGTGAACATGAGTGAGAAGGACTACCAGAGG
AAAAAGAACAAGTTCCTACCTAAGATACATGCCTGGTATTGTTCTCTAGTATATAGTAACTATT
TCTTGAAGGGATTAAGGTGTAATGGAAAATAAGGCAAACTGTTGTTTTTTATTTTCAGGGTTCA
GGAACATGGTGGTGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATATG
CCCCCGGATGAAGCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.128515358
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017