Plant Circular RNA Database

Detail information of Os08g0199300_circ_g.9

			
						 General Information
					
						CircRNA Name
						Os08g0199300_circ_g.9
					
						ID in PlantcircBase
						osa_circ_036289
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 5748422-5750938  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0199300						
					
						Parent gene annotation
						
							Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA b
inding domain TGS (Fragment). (Os08t0199300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os08g0199300_circ_g.1 Os08g0199300_circ_g.2 Os08g0199300_circ_g.3 Os08g0199300_circ_g.4 Os08g0199300_circ_g.5 Os08g0199300_circ_g.6 Os08g0199300_circ_g.7 Os08g0199300_circ_g.8 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0199300-01:7

General Information
CircRNA Name	Os08g0199300_circ_g.9
ID in PlantcircBase	osa_circ_036289
Alias	NA
Organism	Oryza sativa
Position	chr8: 5748422-5750938 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0199300
Parent gene annotation	Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA b inding domain TGS (Fragment). (Os08t0199300-01)
Parent gene strand	+
Alternative splicing	Os08g0199300_circ_g.1 Os08g0199300_circ_g.2 Os08g0199300_circ_g.3 Os08g0199300_circ_g.4 Os08g0199300_circ_g.5 Os08g0199300_circ_g.6 Os08g0199300_circ_g.7 Os08g0199300_circ_g.8
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0199300-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGTTCAGGTAAAGTGTTGGCAGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATT
CACACTGATTTTGAGAGAGGCTTCATATGCGCTGAGgagcatttgaagacaaagaagttactca
tattgatgattcagtggatcctgttagagatttggaaactattggtgaagagctgagactcaag
gtttttat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 656
Transcript exons: 5748422-5748513,5748598-5748696,5748820-5748933,5749534-
5749598,5749686-5749800,5750212-5750289,5750846-5750938
GAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTTAGAGATTTGGA
AACTATTGGTGAAGAGCTGAGACTCAAGGACATTGAGTTTGTGCAGAACAAAATTGATGACCTT
GAGAAATCAATGAAGAGAAGCAATGATAAGCAGCTGAAACTCGAGCATGAATTATGTGAGAAGG
TCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTTGGAGATTGGAAAAGTGCTGACATTGA
GATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAGTTGTCTATTTGGTGAACATGAGTGAG
AAGGACTACCAGAGGAAAAAGAACAAGTTCCTACCTAAGATACATGCCTGGGTTCAGGAACATG
GTGGTGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATATGCCCCCGGA
TGAAGCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGTGTGATCCCAAAAATTATCAAGACT
GGTTTTGCAGCAATCCATCTTATATACTTTTTCACTGCTGGCCCTGACGAGGTAAAGTGTTGGC
AGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATTCACACTGATTTTGAGAGAGG
CTTCATATGCGCTGAG
						
					

						Genomic sequence
						
							GAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTTAGAGATTTGGA
AACTATTGGTGAAGAGCTGAGACTCAAGGTTTTTATAGGGATGCTTGATTTGCACGTCAGTAAA
TGCTTTGGTTAAACCTTCTTTTAAATCCTATCGCACTTTCTTTTGCAGGACATTGAGTTTGTGC
AGAACAAAATTGATGACCTTGAGAAATCAATGAAGAGAAGCAATGATAAGCAGCTGAAACTCGA
GCATGAATTATGTGAGAAGGTGGGGCACCTGTTACAGCCAACCTCTGTGTTGCTAAATTTGTCT
GTTAGCAGCCTTGCATAATTTCAAATTGTTATTTTCTTGAGTGAGTGGAAGCTTACTTTTGGCT
TCTCTTCCTAACAGGTCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTTGGAGATTGGAA
AAGTGCTGACATTGAGATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAGTTGTCTATTTG
GTACGTATTTTTGTCATCTGTATGCCAGTTTATTTGAGATGTTATAAAGTAGTTTTCATGATGA
GGTGTTCAGTTGTTCTTTGTGAGATTTCAGTTTTGTTATTTTCGTGCTTCTGCATTTAGAGACT
CAGTAATAATGTCAGTACGTTGATTCATGGCTATACATGCTTTTGAATTTATACAATAGTGCCC
ATGAATAGCGCATATTGTTTTCTATTAGCAAGATAAACTTGGAATAGTGCAAAACTTATCCTGT
GGACTTTCTGTTGTGCCCTGTTTGTCTGTTTCAGTCTTCCTCCTATTATGTAATGTTTATTTTG
AGGCATCAAGCAATATTCTGAAGCAGTGAATAATACTTTCTTGTTTTATGTATGGGAACTCTAC
CTATATATCATTTTCAGAGCACACAATCAACTATAACCCAAATAGTCACTAATCGTGTAATTAG
CTGTATACCCACCTAACCTAACATGGATATTTTAGTTGACCTGTCAGAAATTGAAAGGGAGATG
CTAGTATGTTACCTTTCCTTGCATATGGTAATTTTTTTTTAATAAAAGTAGAGCTATATATTGT
TTAATGACTGTTTTGTTTTTGCAGGTGAACATGAGTGAGAAGGACTACCAGAGGAAAAAGAACA
AGTTCCTACCTAAGATACATGCCTGGTATTGTTCTCTAGTATATAGTAACTATTTCTTGAAGGG
ATTAAGGTGTAATGGAAAATAAGGCAAACTGTTGTTTTTTATTTTCAGGGTTCAGGAACATGGT
GGTGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATATGCCCCCGGATG
AAGCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGGCAAGCCATGTCACACTCATATACCAT
TAAATGTTCTTTATGTGTTTAGCTTAGTTCCAAAAAAACCAAAGGTAAATTGCTTGATTTGGAA
TCAAGCAAATCAAGCAATACTGTCACACTCATATATGAGTCCTTTTACTTGGATTTTATTTCCT
GAGTGACGCAATAGTGATGCCTATTTTTTGGTTGGGTCACTACGTGTCTTTGAGGTGAATTCCA
TTTGGTCATACTTTCTATAAGATACATTATATGACTATGATTCTATAAACACCAATAGAACTAT
CAAACCAGCAAGAGTCTTTTTAGTTGCATGTTGTTTACCATATATTGTAGCTTCTTTTTTATAT
GATTCAAAATTTCTGATCTGTCATTAGTTGCTTGTCCTTAAGCATTCTCTATTTTTTGCTGCAG
TGTGATCCCAAAAATTATCAAGACTGGTTTTGCAGCAATCCATCTTATATACTTTTTCACTGCT
GGCCCTGACGAGGTATATTTTTTCTGGTCATATTATGCTTATCTTACACTATTACTTGTTGATT
TTAATATAATCCATCTTTTACTTCCCATGTTGCTATATGACAGTAGCATTGCCCTTTAACAATT
GTGTTGTGCAATTTGCTGCACTTTGTTTTAAGTAATACGCAGTACTCCCTCCTACAAAAGTTAT
ACATATTACTTTTACCACCATGACCAAGGAGAAATTAAACTCATCTTGCATGTAACAAAGATAA
GGAGTGTATGCACGCATGCAACCAATGAGTATTAAGATGGCTCCTCGGGTTTTGATCAAACATT
TAATTTACCTATCCATTTAAATCTTGGATGCATACACACTACAAATAGGAACAACTTATTTGGG
AAAACTAAAATATGAAATAGGTCTAATTCTTGTGGATGGAGTACTTTCTTTAGTTCTTATTTTT
TATGTTCTTAATAGTTCAAATGCAAGCGATGTGAAAATTTTAGTTTTATACATTCTTGTTTAAA
TATATGTTTGAAATACATTTTGCTGGATTAGTGACATAGATGGATTTTCTGTTCAGGTAAAGTG
TTGGCAGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATTCACACTGATTTTGAG
AGAGGCTTCATATGCGCTGAG
						
					

			
		

Sequences
Splice junction sequence	TGTTCAGGTAAAGTGTTGGCAGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATT CACACTGATTTTGAGAGAGGCTTCATATGCGCTGAGgagcatttgaagacaaagaagttactca tattgatgattcagtggatcctgttagagatttggaaactattggtgaagagctgagactcaag gtttttat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 656 Transcript exons: 5748422-5748513,5748598-5748696,5748820-5748933,5749534- 5749598,5749686-5749800,5750212-5750289,5750846-5750938 GAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTTAGAGATTTGGA AACTATTGGTGAAGAGCTGAGACTCAAGGACATTGAGTTTGTGCAGAACAAAATTGATGACCTT GAGAAATCAATGAAGAGAAGCAATGATAAGCAGCTGAAACTCGAGCATGAATTATGTGAGAAGG TCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTTGGAGATTGGAAAAGTGCTGACATTGA GATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAGTTGTCTATTTGGTGAACATGAGTGAG AAGGACTACCAGAGGAAAAAGAACAAGTTCCTACCTAAGATACATGCCTGGGTTCAGGAACATG GTGGTGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATATGCCCCCGGA TGAAGCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGTGTGATCCCAAAAATTATCAAGACT GGTTTTGCAGCAATCCATCTTATATACTTTTTCACTGCTGGCCCTGACGAGGTAAAGTGTTGGC AGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATTCACACTGATTTTGAGAGAGG CTTCATATGCGCTGAG
Genomic sequence	GAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTTAGAGATTTGGA AACTATTGGTGAAGAGCTGAGACTCAAGGTTTTTATAGGGATGCTTGATTTGCACGTCAGTAAA TGCTTTGGTTAAACCTTCTTTTAAATCCTATCGCACTTTCTTTTGCAGGACATTGAGTTTGTGC AGAACAAAATTGATGACCTTGAGAAATCAATGAAGAGAAGCAATGATAAGCAGCTGAAACTCGA GCATGAATTATGTGAGAAGGTGGGGCACCTGTTACAGCCAACCTCTGTGTTGCTAAATTTGTCT GTTAGCAGCCTTGCATAATTTCAAATTGTTATTTTCTTGAGTGAGTGGAAGCTTACTTTTGGCT TCTCTTCCTAACAGGTCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTTGGAGATTGGAA AAGTGCTGACATTGAGATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAGTTGTCTATTTG GTACGTATTTTTGTCATCTGTATGCCAGTTTATTTGAGATGTTATAAAGTAGTTTTCATGATGA GGTGTTCAGTTGTTCTTTGTGAGATTTCAGTTTTGTTATTTTCGTGCTTCTGCATTTAGAGACT CAGTAATAATGTCAGTACGTTGATTCATGGCTATACATGCTTTTGAATTTATACAATAGTGCCC ATGAATAGCGCATATTGTTTTCTATTAGCAAGATAAACTTGGAATAGTGCAAAACTTATCCTGT GGACTTTCTGTTGTGCCCTGTTTGTCTGTTTCAGTCTTCCTCCTATTATGTAATGTTTATTTTG AGGCATCAAGCAATATTCTGAAGCAGTGAATAATACTTTCTTGTTTTATGTATGGGAACTCTAC CTATATATCATTTTCAGAGCACACAATCAACTATAACCCAAATAGTCACTAATCGTGTAATTAG CTGTATACCCACCTAACCTAACATGGATATTTTAGTTGACCTGTCAGAAATTGAAAGGGAGATG CTAGTATGTTACCTTTCCTTGCATATGGTAATTTTTTTTTAATAAAAGTAGAGCTATATATTGT TTAATGACTGTTTTGTTTTTGCAGGTGAACATGAGTGAGAAGGACTACCAGAGGAAAAAGAACA AGTTCCTACCTAAGATACATGCCTGGTATTGTTCTCTAGTATATAGTAACTATTTCTTGAAGGG ATTAAGGTGTAATGGAAAATAAGGCAAACTGTTGTTTTTTATTTTCAGGGTTCAGGAACATGGT GGTGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATATGCCCCCGGATG AAGCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGGCAAGCCATGTCACACTCATATACCAT TAAATGTTCTTTATGTGTTTAGCTTAGTTCCAAAAAAACCAAAGGTAAATTGCTTGATTTGGAA TCAAGCAAATCAAGCAATACTGTCACACTCATATATGAGTCCTTTTACTTGGATTTTATTTCCT GAGTGACGCAATAGTGATGCCTATTTTTTGGTTGGGTCACTACGTGTCTTTGAGGTGAATTCCA TTTGGTCATACTTTCTATAAGATACATTATATGACTATGATTCTATAAACACCAATAGAACTAT CAAACCAGCAAGAGTCTTTTTAGTTGCATGTTGTTTACCATATATTGTAGCTTCTTTTTTATAT GATTCAAAATTTCTGATCTGTCATTAGTTGCTTGTCCTTAAGCATTCTCTATTTTTTGCTGCAG TGTGATCCCAAAAATTATCAAGACTGGTTTTGCAGCAATCCATCTTATATACTTTTTCACTGCT GGCCCTGACGAGGTATATTTTTTCTGGTCATATTATGCTTATCTTACACTATTACTTGTTGATT TTAATATAATCCATCTTTTACTTCCCATGTTGCTATATGACAGTAGCATTGCCCTTTAACAATT GTGTTGTGCAATTTGCTGCACTTTGTTTTAAGTAATACGCAGTACTCCCTCCTACAAAAGTTAT ACATATTACTTTTACCACCATGACCAAGGAGAAATTAAACTCATCTTGCATGTAACAAAGATAA GGAGTGTATGCACGCATGCAACCAATGAGTATTAAGATGGCTCCTCGGGTTTTGATCAAACATT TAATTTACCTATCCATTTAAATCTTGGATGCATACACACTACAAATAGGAACAACTTATTTGGG AAAACTAAAATATGAAATAGGTCTAATTCTTGTGGATGGAGTACTTTCTTTAGTTCTTATTTTT TATGTTCTTAATAGTTCAAATGCAAGCGATGTGAAAATTTTAGTTTTATACATTCTTGTTTAAA TATATGTTTGAAATACATTTTGCTGGATTAGTGACATAGATGGATTTTCTGTTCAGGTAAAGTG TTGGCAGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATTCACACTGATTTTGAG AGAGGCTTCATATGCGCTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.208589584

Conservation Information
Conserved circRNAs	NA
PMCS	0.208589584

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5748644-5748502(+)
5748452-5750904(-)
5748429-5749746(-)
						
						Potential amino acid sequence
						
							MKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDY
QRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFA
AIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEEHLKTKKLLILMIQWILLE
IWKLLVKS*(+)
MSNFFVFKCSSAHMKPLSKSV*(-)
MLLSAYEASLKISVNCTSSLRCFSLTSDLPTLYLVRASSEKVYKMDCCKTSLDNFWDHTCNLVF
STIFSSFIRGHIR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5748644-5748502(+) 5748452-5750904(-) 5748429-5749746(-)
Potential amino acid sequence	MKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDY QRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFA AIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEEHLKTKKLLILMIQWILLE IWKLLVKS(+) MSNFFVFKCSSAHMKPLSKSV(-) MLLSAYEASLKISVNCTSSLRCFSLTSDLPTLYLVRASSEKVYKMDCCKTSLDNFWDHTCNLVF STIFSSFIRGHIR*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0199300_circ_g.9

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