Detail information of Os08g0199300_circ_g.4


General Information
CircRNA Name Os08g0199300_circ_g.4
ID in PlantcircBase osa_circ_036284
Alias Os_ciR11697
Organism Oryza sativa
Position chr8: 5747835-5751338  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os08g0199300
Parent gene annotation Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA b
inding domain TGS (Fragment). (Os08t0199300-01)
Parent gene strand +
Alternative splicing Os08g0199300_circ_g.1 Os08g0199300_circ_g.2 Os08g0199300_circ_g.3 Os08g0199300_circ_g.5 Os08g0199300_circ_g.6 Os08g0199300_circ_g.7 Os08g0199300_circ_g.8 Os08g0199300_circ_g.9
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0199300-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTTATGCACATTTGAAACTTATGTGAAATACATTTTTCTGGGATTAGGTAATGAAGTTCGAC
GATCTAAAAGAACTGGGTAGTGAATCTGCTGTGAAGgttgggttaccaaatgttggcaaatcca
ctttctttaacatagtaacaaagctgtctatcccagctgagaacttccctttctgtaccatcga
cccaaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGGTTACCAAATGTTGGCAAATCCACTTTCTTTAACATAGTAACAAAGCTGTCTATCCCAG
CTGAGAACTTCCCTTTCTGTACCATCGACCCAAATGAGGCACGGGTATATGTTCCAGATGAGAG
ATTTGATTGGCTTTGTCAACTTTACAAGCCAAAGAGTGAGGTTTGTTTCTTTCCTACACTATAA
TGTGCAACTTCTTTTCTTATGTTTCAAGACATATCATGTCTTCTGAATTTCTTTGCAGGTGTCT
GCATATCTAGAAATCAATGACATAGCCGGGCTTGTTAGAGGAGCCCATGCTGGGGAGGGTTTGG
GCAATGCCTTCCTATCCCATATACGCGCTGTTGATGGAATTTTTCATGTATTGAGTATGTTCCT
GTTACTTATCATTTTGATTGGATCTTGCATATTGAGTGTGTAGTCATGGACTTGTGCTATTGTT
TCAGTGTGAAGCAAAGTAAACGTTGTGATTGTTCTAGTGAAAGCATTGGTGCTCAGATTCGAAT
CAATTTTCTTTGCTTTTTTGTTTAACCAGTAATCACAAGGTCATGCACTTCATGAATGCTGCTT
ATGTTTATCAGGAGCATTTGAAGACAAAGAAGTTACTCATATTGATGATTCAGTGGATCCTGTT
AGAGATTTGGAAACTATTGGTGAAGAGCTGAGACTCAAGGTTTTTATAGGGATGCTTGATTTGC
ACGTCAGTAAATGCTTTGGTTAAACCTTCTTTTAAATCCTATCGCACTTTCTTTTGCAGGACAT
TGAGTTTGTGCAGAACAAAATTGATGACCTTGAGAAATCAATGAAGAGAAGCAATGATAAGCAG
CTGAAACTCGAGCATGAATTATGTGAGAAGGTGGGGCACCTGTTACAGCCAACCTCTGTGTTGC
TAAATTTGTCTGTTAGCAGCCTTGCATAATTTCAAATTGTTATTTTCTTGAGTGAGTGGAAGCT
TACTTTTGGCTTCTCTTCCTAACAGGTCAAAGCCCATCTTGAAGATGGAAAGGATGTCCGCTTT
GGAGATTGGAAAAGTGCTGACATTGAGATCTTGAATACCTTCCAGCTACTTACAGCTAAGCCAG
TTGTCTATTTGGTACGTATTTTTGTCATCTGTATGCCAGTTTATTTGAGATGTTATAAAGTAGT
TTTCATGATGAGGTGTTCAGTTGTTCTTTGTGAGATTTCAGTTTTGTTATTTTCGTGCTTCTGC
ATTTAGAGACTCAGTAATAATGTCAGTACGTTGATTCATGGCTATACATGCTTTTGAATTTATA
CAATAGTGCCCATGAATAGCGCATATTGTTTTCTATTAGCAAGATAAACTTGGAATAGTGCAAA
ACTTATCCTGTGGACTTTCTGTTGTGCCCTGTTTGTCTGTTTCAGTCTTCCTCCTATTATGTAA
TGTTTATTTTGAGGCATCAAGCAATATTCTGAAGCAGTGAATAATACTTTCTTGTTTTATGTAT
GGGAACTCTACCTATATATCATTTTCAGAGCACACAATCAACTATAACCCAAATAGTCACTAAT
CGTGTAATTAGCTGTATACCCACCTAACCTAACATGGATATTTTAGTTGACCTGTCAGAAATTG
AAAGGGAGATGCTAGTATGTTACCTTTCCTTGCATATGGTAATTTTTTTTTAATAAAAGTAGAG
CTATATATTGTTTAATGACTGTTTTGTTTTTGCAGGTGAACATGAGTGAGAAGGACTACCAGAG
GAAAAAGAACAAGTTCCTACCTAAGATACATGCCTGGTATTGTTCTCTAGTATATAGTAACTAT
TTCTTGAAGGGATTAAGGTGTAATGGAAAATAAGGCAAACTGTTGTTTTTTATTTTCAGGGTTC
AGGAACATGGTGGTGAAACTATTATTCCTTTTAGCTGTGCTTTTGAAAGGTTGCTAGCGGATAT
GCCCCCGGATGAAGCTGCTAAATATTGTGCTGAAAACCAGATTGCAAGGCAAGCCATGTCACAC
TCATATACCATTAAATGTTCTTTATGTGTTTAGCTTAGTTCCAAAAAAACCAAAGGTAAATTGC
TTGATTTGGAATCAAGCAAATCAAGCAATACTGTCACACTCATATATGAGTCCTTTTACTTGGA
TTTTATTTCCTGAGTGACGCAATAGTGATGCCTATTTTTTGGTTGGGTCACTACGTGTCTTTGA
GGTGAATTCCATTTGGTCATACTTTCTATAAGATACATTATATGACTATGATTCTATAAACACC
AATAGAACTATCAAACCAGCAAGAGTCTTTTTAGTTGCATGTTGTTTACCATATATTGTAGCTT
CTTTTTTATATGATTCAAAATTTCTGATCTGTCATTAGTTGCTTGTCCTTAAGCATTCTCTATT
TTTTGCTGCAGTGTGATCCCAAAAATTATCAAGACTGGTTTTGCAGCAATCCATCTTATATACT
TTTTCACTGCTGGCCCTGACGAGGTATATTTTTTCTGGTCATATTATGCTTATCTTACACTATT
ACTTGTTGATTTTAATATAATCCATCTTTTACTTCCCATGTTGCTATATGACAGTAGCATTGCC
CTTTAACAATTGTGTTGTGCAATTTGCTGCACTTTGTTTTAAGTAATACGCAGTACTCCCTCCT
ACAAAAGTTATACATATTACTTTTACCACCATGACCAAGGAGAAATTAAACTCATCTTGCATGT
AACAAAGATAAGGAGTGTATGCACGCATGCAACCAATGAGTATTAAGATGGCTCCTCGGGTTTT
GATCAAACATTTAATTTACCTATCCATTTAAATCTTGGATGCATACACACTACAAATAGGAACA
ACTTATTTGGGAAAACTAAAATATGAAATAGGTCTAATTCTTGTGGATGGAGTACTTTCTTTAG
TTCTTATTTTTTATGTTCTTAATAGTTCAAATGCAAGCGATGTGAAAATTTTAGTTTTATACAT
TCTTGTTTAAATATATGTTTGAAATACATTTTGCTGGATTAGTGACATAGATGGATTTTCTGTT
CAGGTAAAGTGTTGGCAGATCAGACGTCAAACTAAAGCACCTCAAGCTGCTGGTACAATTCACA
CTGATTTTGAGAGAGGCTTCATATGCGCTGAGGTACTCATGCGATATACTCAGGCTTCATATGA
GTAGTTAGTATATGCATGCTAATGTGGTTAGATATTATTGCAAACAATTGATCTCATGTCACTG
TTAAGTAGCTGGTCTAATTCACTAGTTATACTACCTCATTTTGTACAGTTATCCCCAACTCCGC
AGTACTCAATGGACACATTGATTTAGATGTTTTCTGATGCGACTTTTCTAGTTTGATATAGTTC
TTTTATTTGTAATAATTATTCTCTTTGTTTTATATATTTGGTTGGGCTTGTCTGTCCAGTAGCA
TTGTTCTTTTTAGCTTTATGCACATTTGAAACTTATGTGAAATACATTTTTCTGGGATTAGGTA
ATGAAGTTCGACGATCTAAAAGAACTGGGTAGTGAATCTGCTGTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.111610096
Functional Information
Coding potential Y
Potential coding position 5748644-5751335(+)
5747925-5750904(-)
Potential amino acid sequence MKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDY
QRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFA
AIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKVG
LPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDI
AGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDI
EFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK
PVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQI
ASVIPKIIKTGFAAIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDD
LKELGSESAVKVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKP
KSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRD
LETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSAD
IEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMP
PDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE
RGFICAEVMKFDDLKELGSESAVKVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVP
DERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKE
VTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLED
GKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIP
FSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPDEVKCWQIRRQTK
APQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVK(+)
MVQKGKFSAGIDSFVTMLKKVDLPTFGNPTFTADSLPSSFRSSNFITSAHMKPLSKSV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015