Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os08g0199300_circ_g.4 |
ID in PlantcircBase | osa_circ_036284 |
Alias | Os_ciR11697 |
Organism | Oryza sativa |
Position | chr8: 5747835-5751338 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os08g0199300 |
Parent gene annotation |
Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA b inding domain TGS (Fragment). (Os08t0199300-01) |
Parent gene strand | + |
Alternative splicing | Os08g0199300_circ_g.1 Os08g0199300_circ_g.2 Os08g0199300_circ_g.3 Os08g0199300_circ_g.5 Os08g0199300_circ_g.6 Os08g0199300_circ_g.7 Os08g0199300_circ_g.8 Os08g0199300_circ_g.9 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os08t0199300-01:10 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.111610096 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
5748644-5751335(+) 5747925-5750904(-) |
Potential amino acid sequence |
MKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDY QRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFA AIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKVG LPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDI AGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDI EFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSADIEILNTFQLLTAK PVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMPPDEAAKYCAENQI ASVIPKIIKTGFAAIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDD LKELGSESAVKVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKP KSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRD LETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDGKDVRFGDWKSAD IEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIPFSCAFERLLADMP PDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE RGFICAEVMKFDDLKELGSESAVKVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVP DERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKE VTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLED GKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQEHGGETIIP FSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPDEVKCWQIRRQTK APQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVK(+) MVQKGKFSAGIDSFVTMLKKVDLPTFGNPTFTADSLPSSFRSSNFITSAHMKPLSKSV*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015 |