Detail information of BGIOSGA032281_circ_igg.1


General Information
CircRNA Name BGIOSGA032281_circ_igg.1
ID in PlantcircBase osi_circ_008784
Alias Chr10:3521425_3534263(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 2926954-2930076  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032281_circ_g.1 BGIOSGA032281_circ_igg.2 BGIOSGA032281_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATGACATTTCCAAGCTAATTATCTCTATGAATATAAAAAAATCAACAAGCTAAGGGTGCCTT
GTACGAATAGGACAATCCATCCATAACAGAAACAACaatctcggcaagcagccaagcacactcg
ggagcataatggtctacctggacagaccagcaatgatgaggttacaaaatcacgcacccaccga
aaaaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATCTCGGCAAGCAGCCAAGCACACTCGGGAGCATAATGGTCTACCTGGACAGACCAGCAATGA
TGAGGTTACAAAATCACGCACCCACCGAAAAAAAAAATGGCACAAGCTTAACACATGCATTTGG
AAAAAAAAATTGTAAAGAGGTTGACAGGTCCAACTGTATGTCTGCAGATAATTCTCCAATTCCA
TCGGTTTAGCACTACAGACGCCGCCGCGAGATACAAAGCTTCAACACACTGTTTTCAAGTCACA
AGCACCACATGCATGACACATAAATATAACTGAAAAAAGAAACGGTACAAGTCTTGCGCAATTG
CAGGTGTTATGCTGGAACAGGGTTACAAGCTTCTAGCCTTCTATCTTGTTTCTTTAGGTTAAGA
AATCCATCACATTGCGTGATGGCTGGATGGCGGCAGCACCAAGGGAACGAAAAAGCTAGTAAGG
GCGATATCGCCGGCCATGACTCCCTTCGCCACCTCTGCTGCCACCATCCCTCCGGTCACCCCGT
CGCGGTGGGGGCGGAGGTGGGATTCCACCTGGTTGTTGCCTGTCAAGACATTACAAACAGAACT
GTTAGGAAATGAAGATGTATGGTAAGACTTGTTTGTGAGTTATGAGTTTGTGACTCTAGGACAG
CATTATCTTACAGAACATATCCCAGACGACCGTCAGGGAGAACCATTGGTACCATCCTCATTCC
AGCTGGTGCTGGTCCTCTACCATATATCATAGGCTGTAACAAAAATGTTGATAGAGACAATGAC
TAAATTGTCAATACGCAGTGGTGGATGCAGGATTTCTAGCATGGGTATTCAGAGTTACTTAAAG
CATATTTCATGGAAAAGTACAGTATATGAACTACCAAAATCAATGTACAATAGATGACAATGCA
ATTTAATTTAAAGGTGTTACAAATCCATTAAAGAAAACTAGTCCCTCTATCCCAAATTATAAGG
CCTATATTTTTTTACACGGTCTTCAATAACATACTTTGACCAATATTTTATTCCATTCTATGAT
CCCAACAAATATGAAATTAGCATCACATAAAAGTACTTCAAAATATAAATCTAGTGATGTAACA
TGCATAATACTTAGTATAGATATGGTTAGTATGATTATTAGTCAAAAGCAACCAAGTTTGATTT
TCCTTAAAAAGGGGGCGGCGGCGCCCTATAATTTGGGACAGAGGGAGTATAATTTAGCCCCACA
AGCCCCACAATTAACAAACAGCTCATATGTGCGCTTTTTTAGGTTGGCACAAGTACTAAAAAGT
AGATGGGAATGGTTGGAGGAAGGTTGTGATAGATTAAAAAAAGAAAGTAGGTGAAGGAGAATGA
TATTAATTAGTTGAGAGGAGGTAGGTGGAGAAATAGCTTCATTTTGGGACAAGATACTGTGCTA
TAAATAGCTATATTTTGGGACGGAGGTAGTATCTAATAATTAAATGGAAAGTTCATGCAAAAAA
ATCATGATCCATGTATAAAAGAACATTAACAGTATCAATATATGTTGACTAATCTTCAACAGAC
TCACTCAAGGCATTTTTCACAACTTCAGAATATGATGTTTTATCATCATTAGACAACGCTAAGA
ACATCCCCATCTACATACAAATCAAGGGAGTATGTGAAGTGAACGATCTGTCGGATTGCTTTGA
TACACCGTCACAGGTCAATGTTAGTGTTCTTACAACACGCCGATGTGGTTACAGATCTTTCTAC
TTTTGTTTTGGTGTCTATAGTCCACAGTTTTCCATAAAAAAACAATGTACTGTACTTTGACTTC
ACATTTACGTATCAACAAAGAAACTTCGAATTTCGAATCAAGATGCACATATTACAGAGAAGAT
TGGGATTTGGAATCAAGACGCACATGCTAGCTCCTCGATCTACCTGCATGTCCTTGTACAGGAT
CCAGAGATCAACTAGTGCGCAACAGGCACACTACCTGCTCAGCTGCTCCTCCTGGCTCATGTGA
CGTTCTGCCACCCTGGGCACCTGTCAGCTTTGGCACTTGGGACTGCAGTAACCATGCCATGCCT
GGGTGACCGTGCACCCATGCTGCCAGCTGGGTAGCTGGAAATGGGGAATTGACGAATAGAGATG
CTGGATATTGGTTAACTAGGGTTTGGTGTTGGGCATTGTAGGCCACTGGGCCTTATAGGCAGAC
TGTAGCTGAAGTGGCGATGCTCAAGAATGGGTCATTTCGTGGACTGTGGGTTTGGTGGATGGAC
GAAAAGAGCCAGAGAACGAAGCATTTGACCCAACGAGAGTATACATATGTATTATACCTATTTA
TATGTGGATTTTCTCGCAGAATGTGTTTGGTATTTAGGTATAGTAGGACCAACCCTACCATAAG
CACCACTTGGTTTAGTTTGGTTTACCTGGTTGAATCCAGGACCACCACCACCATAAGCACCATA
TGGATCTCCCATGTAGCCACCATAAGGAGGAAGAGGAAAATTTGGAGCTCCTCCAGGCTTGAAC
GAGTGATCAGGCTTCTTGTCTCCCAATGGTTTGGCCATGGATACTTCCAGCACTTGCCCTGTGA
TTCAGTTAGCACAAGATTATTTATAATCAACAATATTTCGAAGTTACTAATATAGAGAGTAGTG
GTGGTAACTGCAAAGGTCCCATAAAATCATTGCAGCAAATGATCAAATCACATCTGCTTTCCAC
ACAAAGCACCTACCTAGATTAAGATCAAGTTTAATAAATAATGATAAAGGATAACAACATGGAG
AAAACATTACCATCAATTTCATACTTTTCGTTTCCTTTAACTGCCTTCAATGCACTTGATCTTT
CAGCAAAATGAACAAACCCAAAATCTCTCTTATTCCCAGCCTTAGCAGGCGGTAAAACGACTTT
TGTGACCTCTCCATGAATTTCAAAGATCTCCTTAATCTTCTCTTTAGAAGCATTCTCTGGTAAG
TTCTTCACATATATAGTCTTCACCTGTAAAAGAAAAGGTCAATCAGACAAATGTTCCTAGGGCT
CAACAAAACAAAATGATATGACATTTCCAAGCTAATTATCTCTATGAATATAAAAAAATCAACA
AGCTAAGGGTGCCTTGTACGAATAGGACAATCCATCCATAACAGAAACAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021