Detail information of BGIOSGA032281_circ_igg.2


General Information
CircRNA Name BGIOSGA032281_circ_igg.2
ID in PlantcircBase osi_circ_008786
Alias Chr10:3533533_3535880(MH63RS2), Chr10:3533533_3535880(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 2929346-2931677  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032281_circ_igg.1 BGIOSGA032281_circ_g.1 BGIOSGA032281_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCGTCGTCGTCGTCCATGATGTCGTCGTCCCCCTCCAGGTCCACCTGCTCCTCCGGCTCCTC
CGACTGCTGCCGATCCGCCATCCCAAAACCCTAACCcctggttgaatccaggaccaccaccacc
ataagcaccatatggatctcccatgtagccaccataaggaggaagaggaaaatttggagctcct
ccaggctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTGAATCCAGGACCACCACCACCATAAGCACCATATGGATCTCCCATGTAGCCACCATA
AGGAGGAAGAGGAAAATTTGGAGCTCCTCCAGGCTTGAACGAGTGATCAGGCTTCTTGTCTCCC
AATGGTTTGGCCATGGATACTTCCAGCACTTGCCCTGTGATTCAGTTAGCACAAGATTATTTAT
AATCAACAATATTTCGAAGTTACTAATATAGAGAGTAGTGGTGGTAACTGCAAAGGTCCCATAA
AATCATTGCAGCAAATGATCAAATCACATCTGCTTTCCACACAAAGCACCTACCTAGATTAAGA
TCAAGTTTAATAAATAATGATAAAGGATAACAACATGGAGAAAACATTACCATCAATTTCATAC
TTTTCGTTTCCTTTAACTGCCTTCAATGCACTTGATCTTTCAGCAAAATGAACAAACCCAAAAT
CTCTCTTATTCCCAGCCTTAGCAGGCGGTAAAACGACTTTTGTGACCTCTCCATGAATTTCAAA
GATCTCCTTAATCTTCTCTTTAGAAGCATTCTCTGGTAAGTTCTTCACATATATAGTCTTCACC
TGTAAAAGAAAAGGTCAATCAGACAAATGTTCCTAGGGCTCAACAAAACAAAATGATATGACAT
TTCCAAGCTAATTATCTCTATGAATATAAAAAAATCAACAAGCTAAGGGTGCCTTGTACGAATA
GGACAATCCATCCATAACAGAAACAACCTTGCACAGGTTGAGCCAGTGGTTAGTGGTATTGAAT
GAGTAGAATAACTTCCAAGTCAAACACTCAATCTAACTAGAATTTCAGATTGCTTTAATCTACA
CACAACAAAGTGTTGTCAGTTATACAATCCCTAGCGTGCCATGTAGAAACTAAAATCATGATGC
AGCTGCATCCTGGAAATACATCAATAAAATGATGGTTATTTTGGTTCAACAATGGTAATCAGTA
GTTCCGGATAACAAAAACTAATGTGAATGAGAAATGATTAATATAAGAATTACAAAATATTTCC
TGTTTATTTGATCATTTGCCAGTTCCTTTAGCAAATTATGGCACAGAAGAAACAAATCCACTGC
CTCTTTTACAAGTGAATTACCCAAATAAATTAGCAGTACAAACAGTTTTTTTCCCAAGGGGCAG
AGCTGCAGTGCATACGTTGAGCATAGATAGCGCTGACATTTCATTTACAGTGTATACCTGGGCA
GCTGCAGAAGAAGAATCTGATGATGATGAACCCTTAGGTTCAGCCCAGCTGACGGTCAACTGGC
TACCATCAACCTTAAAGTTTGGTGCTGACAATTTCTGCTTGGCATAGTCTGCACAAGCATGGTT
ATAATACTCAACAAAGAGGAACCCGCGGTTACGGCTTGGATCATGTAAATCCTGCAGGACCAAA
ACAAGGTCTCAATTAGCAAATTCTGGGCCTTCCTAGTGCAAAGTACAACCATGAAATCACAGAC
ACACCTTGAACATCTCAATGTTCACAACACCTGGGCCCTTCCCCTGGATTATGTTTCTCAGCTC
GTCCTCACTCAACCCCTTGGGTACATTGCCAACAAATAGCCTGTGCTTTGCCTGCGACAATGAG
CACCGCAGTGTCCTCCCCTGCACCACGGACCATACCATCCAACATAAGTGCACCATAGGTGATA
GAATTAGAACCTCCATGGCAACCCAGAGAGCCACAATACCTTGTGTTCTTTGTCATGCAGATCC
TCGATAGCATGCTGAGCCCCATCCTTACCGGTGAAGGTGACAAATGCAAATCCTTTGTTCTCCT
TCGTCTCTTTATCCTTCATCAACCTCACCTGTTGTCATCCAGAGCTTCAGGTTATTGCACTATG
TGTTACAGGGATGCAAAAATTACTGGAAAAGCCTTAGATCATTCAGATACCTCAGAGATTTCGC
CAAACGCCTCGCATAGCTCATGGAGGTCATCCTCGGTGGTGTCACGTGGAAGACCACCGATGAA
CACCTCCGAGCCCTGAGGCGGCAGAGCGAGCAACTCGTCCCATTTCCTCTTCTCCTCCTCGTCC
TCGGGCCCGGCATCGCCGCCAACCTTGTCCATCACATCGGCGCCTCCTTCGCCACCCGCGGCGG
GATCCCCACCCGCACCCCCCGGCCCTTCCGCGTCTTCCCGACGGCCGTCGCCTTCCCCCTGCCT
CTCATCGGGATCCTCCTCCTCCGGGTCGTCGGAGTCCTCGCGGCGGTGGCGGCGGTACCCGTCG
TCGTCGTCCATGATGTCGTCGTCCCCCTCCAGGTCCACCTGCTCCTCCGGCTCCTCCGACTGCT
GCCGATCCGCCATCCCAAAACCCTAACC
Conservation Information
Conserved circRNAs osa_circ_006233
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021