Detail information of BGIOSGA032281_circ_g.1


General Information
CircRNA Name BGIOSGA032281_circ_g.1
ID in PlantcircBase osi_circ_008785
Alias Chr10:3533533_3534107(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 2929346-2929920  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA032281
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA032281_circ_igg.1 BGIOSGA032281_circ_igg.2 BGIOSGA032281_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032281-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAAAACGACTTTTGTGACCTCTCCATGAATTTCAAAGATCTCCTTAATCTTCTCTTTAGAAGC
ATTCTCTGGTAAGTTCTTCACATATATAGTCTTCACcctggttgaatccaggaccaccaccacc
ataagcaccatatggatctcccatgtagccaccataaggaggaagaggaaaatttggagctcct
ccaggctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTGAATCCAGGACCACCACCACCATAAGCACCATATGGATCTCCCATGTAGCCACCATA
AGGAGGAAGAGGAAAATTTGGAGCTCCTCCAGGCTTGAACGAGTGATCAGGCTTCTTGTCTCCC
AATGGTTTGGCCATGGATACTTCCAGCACTTGCCCTGTGATTCAGTTAGCACAAGATTATTTAT
AATCAACAATATTTCGAAGTTACTAATATAGAGAGTAGTGGTGGTAACTGCAAAGGTCCCATAA
AATCATTGCAGCAAATGATCAAATCACATCTGCTTTCCACACAAAGCACCTACCTAGATTAAGA
TCAAGTTTAATAAATAATGATAAAGGATAACAACATGGAGAAAACATTACCATCAATTTCATAC
TTTTCGTTTCCTTTAACTGCCTTCAATGCACTTGATCTTTCAGCAAAATGAACAAACCCAAAAT
CTCTCTTATTCCCAGCCTTAGCAGGCGGTAAAACGACTTTTGTGACCTCTCCATGAATTTCAAA
GATCTCCTTAATCTTCTCTTTAGAAGCATTCTCTGGTAAGTTCTTCACATATATAGTCTTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021