Detail information of BGIOSGA016505_circ_g.3


General Information
CircRNA Name BGIOSGA016505_circ_g.3
ID in PlantcircBase osi_circ_014417
Alias Chr04:22954451_22955996(MH63RS2), Chr04:22897671_22899216(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20627288-20628833  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA016505
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016505_circ_igg.1 BGIOSGA016505_circ_g.1 BGIOSGA016505_circ_g.2 BGIOSGA016505_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016505-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAACTGATGCGGAAGAAGCACTGCAAGGATTGAATGGATCAGTCATTGGAAAGCAGGCAGTT
CGCCTTTCATGGGGCCGCAGCCCATCACATAAACAGggtagtgacgataaaagttatccgcaat
agacaaactggacaatccgagggatatggttttgtagagttctactctcacggatcggcagaga
aggctctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAGTGACGATAAAAGTTATCCGCAATAGACAAACTGGACAATCCGAGGGATATGGTTTTGTA
GAGTTCTACTCTCACGGATCGGCAGAGAAGGCTCTTCAGAATTTTACTGGTCATGTGATGCCTA
ACACTGATCGACCTTTCAAGTTAAACTGGGCTTCATATAGCATGGGTGAAAAGCGATCTGAAGT
TGCTTCTGACTACTCAATTTTCGTTGGTGATCTAGCTGCTGATGTTACTGATGAAATGTTGATG
GAGCTTTTTGCTAATAAGTACCGCTCTGTGAAAGGAGCTAAAGTTATTATTGATGCAAACACAG
GCCGTTCTAGGGGCTATGGGTTTGTTAGATTTGGAGATGACAATGACAAATCCCATGCAATGAC
TGAAATGAATGGTGCGTATTGCTCTACTAGGCCAATTCGTATTGGACCTGCAACTCCCAGAAGG
TCTTCAGGTATGTCTCCTATTTCCTGATTTTTTTAGCACTTTGATATTGCAACTCCTATTTTGT
CCATGGACCGTCTGATGTTTTATGTTATTAGTAGTTTGGCTTGTACTCAATTTGAGCTATTTTT
TTTCAGATTATTAAGTATCACTATAAATTTTGGAAGGTCTGAATTGTTTTTTCACCTTGTACCC
TCCTAATGTTGCTTAATTATACATCTATTACCCCCAACTATTTTTTTGGAACACATAGTGAAGT
TCTAATAAATAACGAATTTGTCCTGTTATTTATCTGGACCCATGCCTTGAAGACCACTTGCAAG
TTGCAAGATGAGAAATTAAAGAATTGTACCTGCCAAGCAAGATCTGCTTCATGGGGATCCCATC
TCGTGGCTAGTGTTTCTAATATTTGGTGGTTTCAGCTTCTCTAACTGCCCCTTGAATTACTTAC
TATAGGTTCCTATCTTCATAATCATTGCTTCACAGCACTAGATTGAATAAAGTTTAGTTAATGT
TCCCAGAGCATATTATGTATGACGTACTTATGTATCTTGCTTTTGTGTAGGGTGCTATACATTT
GTTTTAGTGTTGTATGGAATCAGTTTGGTTTAATCATTTGTTTACCCAGCTTCACTATTATCTT
CAGGTGATTCTGGCTCCTCAACACCTGGGCATTCAGATGGCGATTCTACTAACAGAACGGTGTG
TGGTACTACTGGTTTTCCACGGTGTTTGTCACCCTGTTGCCTGATAATTTCTAATATGTAGTTG
TTGATCTCCTTTAGGTATATGTTGGTGGGCTCGATCCAAATGTCAGCGAAGATGAGCTGAGGAA
GGCATTTGCCAAATATGGTGATGTTGCCTCTGTAAAAATTCCTCTAGGGAAGCAATGTGGCTTT
GTTCAATTCGTCAGCAGGTATGTATCTGAGGCTGTTCTTATTTGGCTACTTAGTTTTATATGAC
ATGCTGGAGATGGTATTTAAGTCTTGCAACTATGTCTTTAGAACTGATGCGGAAGAAGCACTGC
AAGGATTGAATGGATCAGTCATTGGAAAGCAGGCAGTTCGCCTTTCATGGGGCCGCAGCCCATC
ACATAAACAG
Conservation Information
Conserved circRNAs osa_circ_024013
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021