Detail information of BGIOSGA016505_circ_g.4


General Information
CircRNA Name BGIOSGA016505_circ_g.4
ID in PlantcircBase osi_circ_014418
Alias Chr04:22955541_22955811(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20628378-20628648  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016505
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016505_circ_igg.1 BGIOSGA016505_circ_g.1 BGIOSGA016505_circ_g.2 BGIOSGA016505_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016505-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGAAGATGAGCTGAGGAAGGCATTTGCCAAATATGGTGATGTTGCCTCTGTAAAAATTCCTCT
AGGGAAGCAATGTGGCTTTGTTCAATTCGTCAGCAGggtgattctggctcctcaacacctgggc
attcagatggcgattctactaacagaacggtgtgtggtactactggttttccacggtgtttgtc
accctgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATTCTGGCTCCTCAACACCTGGGCATTCAGATGGCGATTCTACTAACAGAACGGTGTGTG
GTACTACTGGTTTTCCACGGTGTTTGTCACCCTGTTGCCTGATAATTTCTAATATGTAGTTGTT
GATCTCCTTTAGGTATATGTTGGTGGGCTCGATCCAAATGTCAGCGAAGATGAGCTGAGGAAGG
CATTTGCCAAATATGGTGATGTTGCCTCTGTAAAAATTCCTCTAGGGAAGCAATGTGGCTTTGT
TCAATTCGTCAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021