Detail information of BGIOSGA016505_circ_g.1


General Information
CircRNA Name BGIOSGA016505_circ_g.1
ID in PlantcircBase osi_circ_005508
Alias 4:20626005|20627427
Organism Oryza sativa ssp. indica
Position chr4: 20626005-20627427  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016505
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016505_circ_igg.1 BGIOSGA016505_circ_g.2 BGIOSGA016505_circ_g.3 BGIOSGA016505_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA016505-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATCCGAGGGATATGGTTTTGTAGAGTTCTACTCTCACGGATCGGCAGAGAAGGCTCTTCAGA
ATTTTACTGGTCATGTGATGCCTAACACTGATCGACcaccaccaccaccgactcctcccaggcg
gccgtgccgcctcaccaccctcaccctcacgcccacccgcacccgcacgcgcacccgcacccgc
accacccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACCACCACCACCGACTCCTCCCAGGCGGCCGTGCCGCCTCACCACCCTCACCCTCACGCCCAC
CCGCACCCGCACGCGCACCCGCACCCGCACCACCCCATGGCGCAGGCGCGGTGGGTCGTCCTGC
CTTACCCGCCTCCGCCGCCGCCCATGGTGGCCGCTCCGCCGCCCCCGCCGCCGCAGTACGCCAA
GCACTTCGCGGCGGGGCCGCCCCCCGCCGCGGCGGCCGGGCGGCGCACGCCGACCCCGCCCGCC
CCCGCCGGATCCGGCGGGAACGGGTGCGAGGAGAACAAGACGATCTGGGTTGGCGACCTCCAGT
ATTGGATGGACGAGAACTACCTCCACAGCTGTTTCGGACCCAGCGGCGAGGTTTGCCTTCACTC
CCCGATCCGGGCTTTCCGTACTAGATCTCACTGATACGATTAGATTCGTGCCATTTCCATGGGT
TAGTTCGCCTGTTAGTGTTCTCAAATTGTCGCAAAAGCATACTTTTGCGTTTATTTGTCGCTCT
ACGCGAATAAAGGTACAAAATATTTGTAGAATTAGCTTTGAGGTTTGCTCGAGGCACCTACTTC
GAGGCCATTCAATGCAATATGACGTAATGCTTTTGTTGGTCTAGTGATTTATGTCTATTGATTC
GTTTTGTTACTGCCGAGTAACTTGAAAGCATGTTCCTTTATTTGGTTGAGTTGTTATTTTATAT
GAAACTGGAAATGGGGCACCCTTTCTGTAGAATTGGTACTTTCGAGCTGCCAAAGGTGCCGACT
TTGTGCTGGGATTTATGTACATGTCCAATTTGATGAGTAGTTTGGAGGAACTGGTCTTGACGTG
TGATGATTTAGTAAACATTTTGAATAAGTCAAGCTAGCTGTTGTACTTTGGTGGTTACATAATT
AGTAATGAACAGTTAGAGGAGGGAAAGGAAGCCATAATGACAGCATTAGCTATTTTGCTGTATT
TTTTGGGACTGTGTCCATCGATGTTGACAGGAAGAAAAATGATGCCTGTTAAGAGGATTATTGT
GATGGAAACTGATGCGGTCAGGGACAGGGTTAATGAACAAAGACACAAAATGGACTGTAATTCT
TGTTTCTGTACTTGTTGCAGGGAACTGTTTATTCTGTATTTGAAATACCAACATCTGTGGTTGT
TAGGTTTATTCAATTACAGAACTAAGGATTACCACTGATCAGTTCGTCAACTTCTTATTTACGA
TGCTTGTGTGTATCTGTGCTATTCCTTGACTGCTAACTTCCTTGCCTTTCGACACCCCTTTTTT
ATAGGTAGTGACGATAAAAGTTATCCGCAATAGACAAACTGGACAATCCGAGGGATATGGTTTT
GTAGAGTTCTACTCTCACGGATCGGCAGAGAAGGCTCTTCAGAATTTTACTGGTCATGTGATGC
CTAACACTGATCGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021