Detail information of Os04g0553800_circ_g.3


General Information
CircRNA Name Os04g0553800_circ_g.3
ID in PlantcircBase osa_circ_024805
Alias NA
Organism Oryza sativa
Position chr4: 27721050-27721480  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0553800
Parent gene annotation Similar to OSIGBa0143N19.10 protein. (Os04t0553800-01);Similar t
o OSIGBa0143N19.10 protein. (Os04t0553800-02);Similar to OSIGBa0
143N19.10 protein. (Os04t0553800-03)
Parent gene strand -
Alternative splicing Os04g0553800_circ_g.1 Os04g0553800_circ_g.2 Os04g0553800_circ_g.4 Os04g0553800_circ_g.5 Os04g0553800_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CC-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGTACATGAAGCAATGCATTAGTGGAAGATTCTATTAACATCAGAATTCAATCATGCAAAT
AAAATGCAAGACAAAATATCTGAGAAAATTACTCACaggaaaggcaacactctgtgcttcagaa
attaagatgcaacaaaatgaatactgttatatgcttcattatcctaaaaaacatgacagaaggt
tgaagact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGAAAGGCAACACTCTGTGCTTCAGAAATTAAGATGCAACAAAATGAATACTGTTATATGCTT
CATTATCCTAAAAAACATGACAGAAGGTTGAAGACTTTGCAATCCACTACTTTATGGAACTTTA
TCCTGACAAAAAAAAAGAAGCACAATAATTCCTTGCCTTGTGCAACTTTATTCTAAAATGTAAA
AGGCTCGATAATGACCTGTTACACATCTTTATTCTAAAGAAGATAGAAAGCAATTCACAAAGGG
CATTTAACCAATCACACGAGTGCACATGATACACTGTTATGGATGATATTACCATCCATGATCC
ATGCTAACAAATTTTGTACATGAAGCAATGCATTAGTGGAAGATTCTATTAACATCAGAATTCA
ATCATGCAAATAAAATGCAAGACAAAATATCTGAGAAAATTACTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.126063283
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017