Detail information of Os04g0553800_circ_g.5


General Information
CircRNA Name Os04g0553800_circ_g.5
ID in PlantcircBase osa_circ_024807
Alias NA
Organism Oryza sativa
Position chr4: 27722465-27722580  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0553800
Parent gene annotation Similar to OSIGBa0143N19.10 protein. (Os04t0553800-01);Similar t
o OSIGBa0143N19.10 protein. (Os04t0553800-02);Similar to OSIGBa0
143N19.10 protein. (Os04t0553800-03)
Parent gene strand -
Alternative splicing Os04g0553800_circ_g.1 Os04g0553800_circ_g.2 Os04g0553800_circ_g.3 Os04g0553800_circ_g.4 Os04g0553800_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-CG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAGTTAAAAGAAATTTTGCAGAAGAAAGGAGAAACCCATATAGCAAGTAATCCTACattcat
agtcattcctagtaatgaagagattaagagctaatatctttccttacatgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCATAGTCATTCCTAGTAATGAAGAGATTAAGAGCTAATATCTTTCCTTACATGGAGAAAGT
TAAAAGAAATTTTGCAGAAGAAAGGAGAAACCCATATAGCAAGTAATCCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.13290158
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017