Detail information of Os04g0553800_circ_g.2


General Information
CircRNA Name Os04g0553800_circ_g.2
ID in PlantcircBase osa_circ_041829
Alias NA
Organism Oryza sativa
Position chr4: 27720820-27720987  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os04g0553800
Parent gene annotation Similar to OSIGBa0143N19.10 protein. (Os04t0553800-01);Similar t
o OSIGBa0143N19.10 protein. (Os04t0553800-02);Similar to OSIGBa0
143N19.10 protein. (Os04t0553800-03)
Parent gene strand -
Alternative splicing Os04g0553800_circ_g.1 Os04g0553800_circ_g.3 Os04g0553800_circ_g.4 Os04g0553800_circ_g.5 Os04g0553800_circ_g.6
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-AT
Number of exons covered Os04t0553800-01:1
Os04t0553800-02:1
Os04t0553800-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCATTCTTCTGTTGTAGCACATCTTTGACAAACTAGGCCGCGCAAGTCGGGTGACTGCAATG
ACTCCAATGTAAAATAGGGCcaggaagaagggtatggtgtaagctgcaagtatggaccatgctg
ccactactctgagtgttgtgagcaaaactatagtactttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 168
Transcript exons: 27720820-27720987
CAGGAAGAAGGGTATGGTGTAAGCTGCAAGTATGGACCATGCTGCCACTACTCTGAGTGTTGTG
AGCAAAACTATAGTACTTTTCTCCATTCTTCTGTTGTAGCACATCTTTGACAAACTAGGCCGCG
CAAGTCGGGTGACTGCAATGACTCCAATGTAAAATAGGGC

Genomic sequence CAGGAAGAAGGGTATGGTGTAAGCTGCAAGTATGGACCATGCTGCCACTACTCTGAGTGTTGTG
AGCAAAACTATAGTACTTTTCTCCATTCTTCTGTTGTAGCACATCTTTGACAAACTAGGCCGCG
CAAGTCGGGTGACTGCAATGACTCCAATGTAAAATAGGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.241182639
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study