Detail information of Os05g0341300_circ_g.2


General Information
CircRNA Name Os05g0341300_circ_g.2
ID in PlantcircBase osa_circ_027473
Alias NA
Organism Oryza sativa
Position chr5: 16007835-16007959  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os05g0341300
Parent gene annotation Similar to guanine nucleotide-binding protein alpha-1 subunit. (
Os05t0341300-01)
Parent gene strand -
Alternative splicing Os05g0333150_circ_ag.1 Os05g0333200_circ_g.1 Os05g0333200_circ_ag.1 Os05g0333500_circ_ag.1 Os05g0333500_circ_ag.2 Os05g0333500_circ_ag.3 Os05g0334000_circ_ag.1 Os05g0335100_circ_g.1 Os05g0335401_circ_g.1 Os05g0335401_circ_g.2 Os05g0335401_circ_g.3 Os05g0335401_circ_g.4 Os05g0336000_circ_g.1 Os05g0339000_circ_g.1 Os05g0339000_circ_g.2 Os05g0339000_circ_g.3 Os05g0341300_circ_g.1 Os05g0341300_circ_g.3 Os05g0341300_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AT
Number of exons covered Os05t0341300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTTTTGGTTATTGAGTTTTCATAAGGTGGTTCAGTTGTTTAATTGACGGATATTCTCACca
aataaggattttggcggtatcggcttgggaggggaattggctatctcttggtggagctaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAATAAGGATTTTGGCGGTATCGGCTTGGGAGGGGAATTGGCTATCTCTTGGTGGAGCTAAGG
GTGTTTTGGTTATTGAGTTTTCATAAGGTGGTTCAGTTGTTTAATTGACGGATATTCTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.123333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017