Detail information of BGIOSGA034126_circ_igg.1


General Information
CircRNA Name BGIOSGA034126_circ_igg.1
ID in PlantcircBase osi_circ_009547
Alias Chr11:11242528_11244696(MH63RS2), Chr11:10922785_10924955(ZS97RS2), Chr11:11242528_11244696(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 9444332-9446502  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034126_circ_g.1 BGIOSGA034126_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACAGCAACAGCAGCCCCCCATGCTATCCTGAATGAAAAAGCTTACTCCAGGCTATGAAATAG
CTGCCGTTTAAAACTAAAATTCCGTCTCTCATAGCCcctggtcacaaactgggcaggtatcact
tcgctccatccattcaagtatgcaacaaagatggaaatgatgctcacatttagttaaagagcga
ggattttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTCACAAACTGGGCAGGTATCACTTCGCTCCATCCATTCAAGTATGCAACAAAGATGGAA
ATGATGCTCACATTTAGTTAAAGAGCGAGGATTTTCTGCATCATATTCTGGTGAAAGGACAAAC
AGAAGTCATGACTGGAGTTTTGTGGTCCATAAGAAAATAAGCAAATAAGATTTAGAGTATCAAT
AAATGTTAATGGAGTGCAAGTACAATGCACATTGTTACCCAATATTGCACCTAGGAATCAACAA
AAGGGTATGTACCAATTGAGAAAAAAGAATATACACAATTGGAACCCTTCATCTCTTTGAGAAG
CAACTATCTAAGATTGGTTGCATATTAAGCACAACACTTCTTAAGGCTTATTTCATATGCAGCA
TGGCCATATACATCCATTAAGGATGTGCATACATATTACATCTATTGAAGGTAAATAAAAGGAG
CACAAGCAATCCTTTAATTGGTAAATTATAGGTAAGATATCCTAAACCATTATTTCCGAAATTA
AGAATAGTTTCTTTCAGCTAAAAACAAACGGATCAAACATACAGTGCACTTTTACCAGTTTTAC
TGTGACAGTAGTAAAATAGCACTACAGCAGGCAGAACACGTGTATCCAGTTCTACATTCAACCA
GGTAAAGTTTGTACTCAAACAAATATCCAGTTATTATTATGGCAATCTAAGGAATCGGGTTTTC
AATGGTCAAAAGAAATACAACCTTCAAGACAGATTGGGCAAACATCCTCCTCATCAGGCTTATC
TTCAGCGACACATTTTTCACATGATTTGAACTCATCCACCTCTAAAGATTCCTCCTGTTGGTCA
TCGGTTTTGCTCTTCAGGTCTGACTTCTCCAAATCTGAAAATGAATTTGAAACTATAAGCTTCC
ACCACTACCATTTGAGGTTAATTCCATTCCTCATGTTCACAGGCTCAAAGGTAGTTAGTTTACC
AGGGTTTTCTGGGACTGGCAAACTAACATCATAAGGCAATGGTGCAGGTGGTGCTCGGTAAGTA
TCAGGAGTGGATGTATCCAGATTTGTGTCAACAGCAACTATAGCAGAAGCTGGAGATGATCCAT
CATAGGCTGAAGACAATGGTTCATGCTCCTCTTGATTTTGCTGACGCTGAACAAAGAAAAGCCA
AATAACATAAGCCAAATAAAGCGTTGGACAATGCAAACAGTACAAATACCAAGTTATATTATCA
ATTAACTGGCTACACTTGTTTAAAGCAAGCTGCACACTTTCTAGAGTTTTCAACTTGATATTGC
TGAATCTCAAGTGAATACTCAAATTGGAGAGTCACACTAAAAGAGAAATAAATTCTCCTGTTGC
ACTGAAACTACAAAGTTATCTGTACACTCCTAGCACCACGATGTTATTAATATGTGCAAGTAAC
AGAAGCACAATCTGGGCCACTCTCATATGACAGATGATAGATAACTAAATCACGTATTAATAGG
CAGAAGCATAGAGAAACCAAAATATAAAATTAGAAATATGTCAAAATCTTGAAATGGATCGATT
TGGTGTTAACGAAATGCACCAACACTAAACTGCAGTTAATGACAAGAACAAGAAAAAAAACTAC
CACTTTCAGGTATACCTTTCTACTGGAAAAGTAGAACAGATGTTAGATATACCTAAGATTAATT
TCAGGTTGCATGGTACTGCATAATGTCGCACAAGTTTTTCTCTTTTTTTTTTTAGATAAGGAAG
ATGGTTACATCCCCAGTCTCTGCATCTAGGATGCACACAACCATCAAGTTTGAGTTTTAAGAAA
CAGTCTCAATAAGGGATGGAAACCCCCATGAGAATAAGCAAAGCATGCAGTAAATAGAAGCACA
TAAAGCATGATGCACTAAGTAAAAGCATATTAGGCATGAATCCTATTAGTAGCCTGCCATCCAA
AGTGGGTAAAAAAGGTCCTTGACGATCAACTCCAGGAGTGTGGCTCTTGGTAATAATAGAACAT
TTGAATTAAGATAATGTATCTAAGATAATTCAGGATCTACATACATAGATATGAACTGGTGCTC
TATCTGTCTCAGATCCTCTTGATGAACAGCAACAGCAGCCCCCCATGCTATCCTGAATGAAAAA
GCTTACTCCAGGCTATGAAATAGCTGCCGTTTAAAACTAAAATTCCGTCTCTCATAGCC
Conservation Information
Conserved circRNAs osa_circ_009112 osa_circ_009110
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021