Detail information of BGIOSGA034126_circ_g.1


General Information
CircRNA Name BGIOSGA034126_circ_g.1
ID in PlantcircBase osi_circ_009546
Alias Chr11:10922785_10923918(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 9444332-9445465  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA034126
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034126_circ_igg.1 BGIOSGA034126_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA034126-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTATCCAGATTTGTGTCAACAGCAACTATAGCAGAAGCTGGAGATGATCCATCATAGGCTGA
AGACAATGGTTCATGCTCCTCTTGATTTTGCTGACGcctggtcacaaactgggcaggtatcact
tcgctccatccattcaagtatgcaacaaagatggaaatgatgctcacatttagttaaagagcga
ggattttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTCACAAACTGGGCAGGTATCACTTCGCTCCATCCATTCAAGTATGCAACAAAGATGGAA
ATGATGCTCACATTTAGTTAAAGAGCGAGGATTTTCTGCATCATATTCTGGTGAAAGGACAAAC
AGAAGTCATGACTGGAGTTTTGTGGTCCATAAGAAAATAAGCAAATAAGATTTAGAGTATCAAT
AAATGTTAATGGAGTGCAAGTACAATGCACATTGTTACCCAATATTGCACCTAGGAATCAACAA
AAGGGTATGTACCAATTGAGAAAAAAGAATATACACAATTGGAACCCTTCATCTCTTTGAGAAG
CAACTATCTAAGATTGGTTGCATATTAAGCACAACACTTCTTAAGGCTTATTTCATATGCAGCA
TGGCCATATACATCCATTAAGGATGTGCATACATATTACATCTATTGAAGGTAAATAAAAGGAG
CACAAGCAATCCTTTAATTGGTAAATTATAGGTAAGATATCCTAAACCATTATTTCCGAAATTA
AGAATAGTTTCTTTCAGCTAAAAACAAACGGATCAAACATACAGTGCACTTTTACCAGTTTTAC
TGTGACAGTAGTAAAATAGCACTACAGCAGGCAGAACACGTGTATCCAGTTCTACATTCAACCA
GGTAAAGTTTGTACTCAAACAAATATCCAGTTATTATTATGGCAATCTAAGGAATCGGGTTTTC
AATGGTCAAAAGAAATACAACCTTCAAGACAGATTGGGCAAACATCCTCCTCATCAGGCTTATC
TTCAGCGACACATTTTTCACATGATTTGAACTCATCCACCTCTAAAGATTCCTCCTGTTGGTCA
TCGGTTTTGCTCTTCAGGTCTGACTTCTCCAAATCTGAAAATGAATTTGAAACTATAAGCTTCC
ACCACTACCATTTGAGGTTAATTCCATTCCTCATGTTCACAGGCTCAAAGGTAGTTAGTTTACC
AGGGTTTTCTGGGACTGGCAAACTAACATCATAAGGCAATGGTGCAGGTGGTGCTCGGTAAGTA
TCAGGAGTGGATGTATCCAGATTTGTGTCAACAGCAACTATAGCAGAAGCTGGAGATGATCCAT
CATAGGCTGAAGACAATGGTTCATGCTCCTCTTGATTTTGCTGACG
Conservation Information
Conserved circRNAs osa_circ_009111
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021