Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0004s02080_circ_g.3 |
ID in PlantcircBase | pop_circ_001188 |
Alias | Chr04:1430250-1430706 |
Organism | Populus trichocarpa |
Position | chr4: 1306970-1307426 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | e-circRNA |
Identification method | CIRI2; circRNA_finder |
Parent gene | POPTR_0004s02080 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | POPTR_0004s02080_circ_g.1 POPTR_0004s02080_circ_g.2 POPTR_0004s02080_circ_g.4 POPTR_0004s02080_circ_g.5 |
Support reads | 11,4,44 |
Tissues | leaf; cambium; xylem |
Exon boundary | No-No |
Splicing signals | GT-CA |
Number of exons covered | POPTR_0004s02080.2:2 POPTR_0004s02080.1:1 |
Conservation Information | |
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Conserved circRNAs |
osa_circ_013227 osa_circ_013248 osa_circ_013247 osi_circ_003676 ath_circ_029470 osa_circ_013251 osi_circ_012543 ath_circ_029472 ath_circ_029798 ath_circ_029799 zma_circ_004938 zma_circ_004935 zma_circ_004921 zma_circ_008602 |
PMCS | 0.809509209 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Song et al., 2020 |