Detail information of Zm00001d015327_circ_g.13


General Information
CircRNA Name Zm00001d015327_circ_g.13
ID in PlantcircBase zma_circ_004921
Alias ovule_test_circ_002696
Organism Zea mays
Position chr5: 84631650-84632562  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d015327
Parent gene annotation ubiquitin1
Parent gene strand -
Alternative splicing Zm00001d015327_circ_g.3 Zm00001d015327_circ_g.4 Zm00001d015327_circ_g.5 Zm00001d015327_circ_g.6 Zm00001d015327_circ_g.7 Zm00001d015327_circ_g.8 Zm00001d015327_circ_g.9 Zm00001d015327_circ_g.10 Zm00001d015327_circ_g.11 Zm00001d015327_circ_g.12 Zm00001d015327_circ_g.14 Zm00001d015327_circ_g.15 Zm00001d015327_circ_g.16 Zm00001d015327_circ_g.17 Zm00001d015327_circ_g.18 Zm00001d015327_circ_g.19 Zm00001d015327_circ_g.20 Zm00001d015327_circ_g.21 Zm00001d015327_circ_g.22 Zm00001d015327_circ_g.23 Zm00001d015327_circ_g.24 Zm00001d015327_circ_g.25 Zm00001d015327_circ_g.26 Zm00001d015327_circ_g.27 Zm00001d015327_circ_g.28 Zm00001d015327_circ_g.29 Zm00001d015327_circ_g.30 Zm00001d015327_circ_g.31 Zm00001d015327_circ_g.32 Zm00001d015327_circ_g.33 Zm00001d015327_circ_g.34 Zm00001d015327_circ_g.35 Zm00001d015327_circ_g.36 Zm00001d015327_circ_g.37 Zm00001d015327_circ_g.38 Zm00001d015327_circ_g.39 Zm00001d015327_circ_g.40 Zm00001d015327_circ_g.41 Zm00001d015327_circ_g.42 Zm00001d015327_circ_g.43 Zm00001d015327_circ_g.44 Zm00001d015327_circ_g.45 Zm00001d015327_circ_g.46 Zm00001d015327_circ_g.47 Zm00001d015327_circ_g.48 Zm00001d015327_circ_g.49 Zm00001d015327_circ_g.50 Zm00001d015327_circ_g.51 Zm00001d015327_circ_g.52 Zm00001d015327_circ_g.53 Zm00001d015327_circ_g.54 Zm00001d015327_circ_g.55 Zm00001d015327_circ_g.56 Zm00001d015327_circ_g.57 Zm00001d015327_circ_g.58 Zm00001d015327_circ_g.59 Zm00001d015327_circ_g.60 Zm00001d015327_circ_g.61 Zm00001d015327_circ_g.62
Support reads NA
Tissues ovule
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered Zm00001d015327_T003:2
Zm00001d015327_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT
GGCCTTGACGTTGTCGATGGTGTCTGAAGACTCCACcctccagggttatggtttttccagtcag
ggtctttacaaagatctgcataccacctctgaggcggagaacaaggtgaagggtgctctccttc
tggatgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCAGGGTTATGGTTTTTCCAGTCAGGGTCTTTACAAAGATCTGCATACCACCTCTGAGGCG
GAGAACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCC
AGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT
TGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAA
TGTCTTCACAAAAATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTC
TGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCT
GCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCCGA
AGACTCCACCTCAAGGGTGATTGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATACCACCC
CTGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGC
CATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC
CTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTG
CCGGTCAGGGTCTTCACGAAGATCTGCATGCCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTGC
TCTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGAT
GAGCCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATG
GTGTCTGAAGACTCCAC
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018