Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0004s02080_circ_g.5 |
ID in PlantcircBase | pop_circ_001190 |
Alias | Chr04:1430460|1430687 |
Organism | Populus trichocarpa |
Position | chr4: 1307180-1307407 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | POPTR_0004s02080 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | POPTR_0004s02080_circ_g.1 POPTR_0004s02080_circ_g.2 POPTR_0004s02080_circ_g.3 POPTR_0004s02080_circ_g.4 |
Support reads | NA |
Tissues | stem cambium |
Exon boundary | No-No |
Splicing signals | AT-AT |
Number of exons covered | POPTR_0004s02080.1:1 POPTR_0004s02080.2:1 |
Conservation Information | |
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Conserved circRNAs | zma_circ_004683 |
PMCS | 1.809436696 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zheng et al., 2020 |