Detail information of PGSC0003DMG400002168_circ_ag.1


General Information
CircRNA Name PGSC0003DMG400002168_circ_ag.1
ID in PlantcircBase stu_circ_001095
Alias chr09:1018641|1020242
Organism Solanum tuberosum
Position chr9: 1018642-1020242  JBrowse»
Reference genome 3.0.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400008482_circ_ag.1 PGSC0003DMG400020343_circ_g.1 PGSC0003DMG400020347_circ_g.1 PGSC0003DMG400024261_circ_ag.1 PGSC0003DMG400008917_circ_g.1 PGSC0003DMG400008917_circ_g.2 PGSC0003DMG400008917_circ_g.3 PGSC0003DMG400008924_circ_ag.1 PGSC0003DMG400008926_circ_g.1 PGSC0003DMG400008934_circ_g.1 PGSC0003DMG401008964_circ_igg.1 PGSC0003DMG402002659_circ_igg.1 PGSC0003DMG402002659_circ_ag.1 PGSC0003DMG400002662_circ_ig.1 PGSC0003DMG400002662_circ_ig.2 PGSC0003DMG400002706_circ_ig.1 PGSC0003DMG400021562_circ_g.1 PGSC0003DMG400020909_circ_ig.1 PGSC0003DMG400020913_circ_ig.1 PGSC0003DMG400020913_circ_ig.2 PGSC0003DMG400027903_circ_g.1
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACTCATTATCAAGAATTTTCAACATCTCATAAGCTTCCTCTTTAGCTTTCTCTTGTTCCTC
TCCTTTCGAAAAGAAACTTTTCCACACTGCTGCCCCttatcttcgaagaatttagcccagaaac
gagctaaagctcgatcataagggtctttaggtaagattggagggccttcaaatgtctcatcgat
gtattcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATCTTCGAAGAATTTAGCCCAGAAACGAGCTAAAGCTCGATCATAAGGGTCTTTAGGTAAGA
TTGGAGGGCCTTCAAATGTCTCATCGATGTATTCGAGAATCACACTTGACTCACAAAGGGGCTT
GCCATTGTGAATGAGCACAGGAACTGCCTTGTGAATTGGATTAGATTGAAGAAGTAAAGAGCTC
TTATTTTGTAGATCATCTTCTATATATTCATATTCTACACCCTTAATCTTTAGAGCCCATTCAA
CTCTTTTACTAAAAGGGCTATACCATAAACCAATCAACTTAACATTAGACATCTCTCAAATTTG
GCTAACTATGTTTTTGCTTTACTAATTGAGGGAATTTGTATGTGGTTGTGATCTCCCCTTGAGG
TCTAGTGCCTTCTTTTATATAGGGAAGTTTCTTAGCAAAATCCAGCAAATGCATTGATGTTTCC
AAAGTATTTTGTTTTGACACTTAAATATATGTTTTGTTTAACAAATGGCACATATATAAGTCAC
CATTTTACACAATACTTGTCATCTACTCTCACCGTTGTTATTTGTATGTCACCATTTTAGTTTT
CACATCTCTTAAGAAATTAAGTAAATTTATTATGTATTCTTATTTAATGTTCTCTTATAGTCAA
TTTTTTAATAAATAAACATAAATTAATTTATTTTAATTGATTTAATTGACCAATAAACATGAAG
TAATCATTTAATTTAGATTAGTTTTATTAATTCAGTTTGTTGATGAAAATGATAAATATGCATT
ATTTATTACTCCCCTCGTTCCTATTTATATGCTGCTGTTGTTATTAAAAATAGATGAGCTTTCT
TAATATTTATTATTTTATAAAATCAATGCATATATATATATTTCCCTATATTATACACACTATT
TATGGAGTACTTACTTAATGGGTGGCAGGTTAACTAATTAATGGTGTGGGTAGAGCTGGCCTCA
ACGATCAAGTTTTTTTTTTTTTTTTTTTTACGGCTTCAATGATAACATTAAATTATTATCTTTT
TAAAATTTTGTGTCAAGTTAAAATAAGATAAATAATTTAATTCGGACAAAAGTAGTGTATCAAG
CTTTCTTTCTCTTAACAATACTTTTATTTATACGTGAATCCAAAATTTATATTAACTAGTGAAA
TAAAGATAAATCTTATAACATGCAACTTTAATATATTTCAATTGAATTTACAAAAACTCAATTT
TTATTGCCACACAAAATCTTGAAATTCACTTGAGGTATACTCATTTTGAAGCATCAACAGGCTG
AATGTAGGCTCGGTAACGGATAAGCAATTCATCTCTTGAAGGAAAATATTCCTCGTTTTGTGTG
CAATATTCATCTCTCCAAGCACAAAAATTTGGAAATTTTTCACTTGTTACCAAAACAACTCCAG
ATACTTCTTCAAGAATTCCCAAATAAAGTGCTGCACCATTTGCAACAATATCAGCAAATCCAAA
TTTGTCACCAACAAAGCACTTCTTGTCCTTGAACTCATTATCAAGAATTTTCAACATCTCATAA
GCTTCCTCTTTAGCTTTCTCTTGTTCCTCTCCTTTCGAAAAGAAACTTTTCCACACTGCTGCCC
C
Conservation Information
Conserved circRNAs NA
PMCS 0.135231038
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018