Detail information of Os04g0645100_circ_g.5


General Information
CircRNA Name Os04g0645100_circ_g.5
ID in PlantcircBase osa_circ_041885
Alias NA
Organism Oryza sativa
Position chr4: 32836762-32836853  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRI-long
Parent gene Os04g0645100
Parent gene annotation Tetratricopeptide repeat (TPR) domain containing protein, Grain
size and starch quality (Os04t0645100-01);Similar to H0811D08.1
protein. (Os04t0645100-02)
Parent gene strand +
Alternative splicing Os04g0645100_circ_g.2 Os04g0645100_circ_g.3 Os04g0645100_circ_g.4 Os04g0645100_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0645100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGAAATCGTGTCGCTGAAACCATGCTCTCTCACCATCGTGGAAGcgtgtgatgtatgacgca
gacgcgagggcagcggctggaggacggc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 92
Transcript exons: 32836762-32836853
CGTGTGATGTATGACGCAGACGCGAGGGCAGCGGCTGGAGGACGGCGTGGAAATCGTGTCGCTG
AAACCATGCTCTCTCACCATCGTGGAAG

Genomic sequence CGTGTGATGTATGACGCAGACGCGAGGGCAGCGGCTGGAGGACGGCGTGGAAATCGTGTCGCTG
AAACCATGCTCTCTCACCATCGTGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.213771377
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study