Detail information of Os04g0645100_circ_g.3


General Information
CircRNA Name Os04g0645100_circ_g.3
ID in PlantcircBase osa_circ_025602
Alias NA
Organism Oryza sativa
Position chr4: 32836101-32836204  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0645100
Parent gene annotation Tetratricopeptide repeat (TPR) domain containing protein, Grain
size and starch quality (Os04t0645100-01);Similar to H0811D08.1
protein. (Os04t0645100-02)
Parent gene strand +
Alternative splicing Os04g0645100_circ_g.2 Os04g0645100_circ_g.4 Os04g0645100_circ_g.5 Os04g0645100_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATACCTGAAAGGACAATGGACAGGACAAGCAAAAGTGAACAGAAACTGGTgtatgtgtggct
gcattagctggctggtacttgctgcacacatgaacacaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGTGTGGCTGCATTAGCTGGCTGGTACTTGCTGCACACATGAACACACAAAATACCTGAAA
GGACAATGGACAGGACAAGCAAAAGTGAACAGAAACTGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.205929487
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017