Detail information of BGIOSGA015181_circ_ag.1


General Information
CircRNA Name BGIOSGA015181_circ_ag.1
ID in PlantcircBase osi_circ_005418
Alias 4:17333243|17333667
Organism Oryza sativa ssp. indica
Position chr4: 17333243-17333667  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015181_circ_igg.1 BGIOSGA015181_circ_igg.2 BGIOSGA015181_circ_g.1 BGIOSGA015181_circ_ag.2 BGIOSGA015181_circ_g.3 BGIOSGA015181_circ_g.4 BGIOSGA015181_circ_ag.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCGGAAGTACTGCTTCAGCTCTTCAGTCACCAAGCTCTAATCCTATTGTAGCTGGTGTCTT
TCTCATCATAGTCAAGGTCAAATCCAATCTTCCGTCcaccgttaagaactatcaccttgccctc
tgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatcttctccgcc
aagctgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACCGTTAAGAACTATCACCTTGCCCTCTGAATCCACATCAACAATAGCAGAGTCACCTTCCTT
GACCTCGCCAGCCAACATCTTCTCCGCCAAGCTGTCCTCCAGAAGCCTCATAATAGCACGCCGC
AGAGGCCTGGCACCATAGCTTGGGTTGTAACCTTCGTCGACAACTCTATCCCGGAACTTCTCTG
TCACCTGGAGGTCGATGTCCTTTGCCTTGAGCCTGTCAAACACTTCTTTGAGCATAATATCAGC
AATCTCCTTAACCTCCAGCTTGGTAAGCTGCCGGAACACAATCATCTCCTCCAATCTGTTTAAG
AACTCAGGTCGGAAGTACTGCTTCAGCTCTTCAGTCACCAAGCTCTAATCCTATTGTAGCTGGT
GTCTTTCTCATCATAGTCAAGGTCAAATCCAATCTTCCGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021