Detail information of BGIOSGA015181_circ_g.4


General Information
CircRNA Name BGIOSGA015181_circ_g.4
ID in PlantcircBase osi_circ_005420
Alias 4:17333310|17333510
Organism Oryza sativa ssp. indica
Position chr4: 17333310-17333510  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015181
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015181_circ_igg.1 BGIOSGA015181_circ_igg.2 BGIOSGA015181_circ_g.1 BGIOSGA015181_circ_ag.1 BGIOSGA015181_circ_ag.2 BGIOSGA015181_circ_g.3 BGIOSGA015181_circ_ag.5
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA015181-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACTCTATCCCGGAACTTCTCTGTCACCTGGAGGTCGATGTCCTTTGCCTTGAGCCTGTCAAA
CACTTCTTTGAGCATAATATCAGCAATCTCCTTAACctcgccagccaacatcttctccgccaag
ctgtcctccagaagcctcataatagcacgccgcagaggcctggcaccatagcttgggttgtaac
cttcgtcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGCCAGCCAACATCTTCTCCGCCAAGCTGTCCTCCAGAAGCCTCATAATAGCACGCCGCAGA
GGCCTGGCACCATAGCTTGGGTTGTAACCTTCGTCGACAACTCTATCCCGGAACTTCTCTGTCA
CCTGGAGGTCGATGTCCTTTGCCTTGAGCCTGTCAAACACTTCTTTGAGCATAATATCAGCAAT
CTCCTTAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021