Detail information of BGIOSGA015181_circ_g.1


General Information
CircRNA Name BGIOSGA015181_circ_g.1
ID in PlantcircBase osi_circ_014309
Alias Chr04:20091775_20091968(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17333236-17333429  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015181
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015181_circ_igg.1 BGIOSGA015181_circ_igg.2 BGIOSGA015181_circ_ag.1 BGIOSGA015181_circ_ag.2 BGIOSGA015181_circ_g.3 BGIOSGA015181_circ_g.4 BGIOSGA015181_circ_ag.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA015181-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAGCTGTCCTCCAGAAGCCTCATAATAGCACGCCGCAGAGGCCTGGCACCATAGCTTGGGTT
GTAACCTTCGTCGACAACTCTATCCCGGAACTTccactaccaccgttaagaactatcaccttgc
cctctgaatccacatcaacaatagcagagtcaccttccttgacctcgccagccaacatcttctc
cg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACTACCACCGTTAAGAACTATCACCTTGCCCTCTGAATCCACATCAACAATAGCAGAGTCAC
CTTCCTTGACCTCGCCAGCCAACATCTTCTCCGCCAAGCTGTCCTCCAGAAGCCTCATAATAGC
ACGCCGCAGAGGCCTGGCACCATAGCTTGGGTTGTAACCTTCGTCGACAACTCTATCCCGGAAC
TT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021