Detail information of Os03g0773600_circ_g.18


General Information
CircRNA Name Os03g0773600_circ_g.18
ID in PlantcircBase osa_circ_022067
Alias NA
Organism Oryza sativa
Position chr3: 32067832-32068072  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0773600
Parent gene annotation Kinesin, motor region domain containing protein. (Os03t0773600-0
1);Hypothetical conserved gene. (Os03t0773600-02)
Parent gene strand +
Alternative splicing Os03g0773600_circ_g.1 Os03g0773600_circ_g.2 Os03g0773600_circ_g.3 Os03g0773600_circ_g.4 Os03g0773600_circ_g.5 Os03g0773600_circ_g.6 Os03g0773600_circ_g.7 Os03g0773600_circ_g.8 Os03g0773600_circ_g.9 Os03g0773600_circ_g.10 Os03g0773600_circ_g.11 Os03g0773600_circ_g.12 Os03g0773600_circ_g.13 Os03g0773600_circ_g.14 Os03g0773600_circ_g.15 Os03g0773600_circ_g.16 Os03g0773600_circ_g.17 Os03g0773600_circ_g.19 Os03g0773600_circ_g.20
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   TA-CG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATACTTAATATCTTAATCTGATGTATCACTGAGATTTTGTTTCTACGAAGACAGCTGCTGTAG
GACGTAGTGCTGGACATCTTTACTACATTCTATTAAgtaattacatattgtgaatttccttctt
tcctttctgtaagtagatgctgttatggccattcagcttttgaagaatttgttgatatcttgct
tagcaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAATTACATATTGTGAATTTCCTTCTTTCCTTTCTGTAAGTAGATGCTGTTATGGCCATTCAG
CTTTTGAAGAATTTGTTGATATCTTGCTTAGCAAAACAATGCATTTCTATCTGTTTAATGAACT
GCTATTTAAGGAGGATACTTAATATCTTAATCTGATGTATCACTGAGATTTTGTTTCTACGAAG
ACAGCTGCTGTAGGACGTAGTGCTGGACATCTTTACTACATTCTATTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.322516943
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017