Detail information of Os03g0773600_circ_g.7


General Information
CircRNA Name Os03g0773600_circ_g.7
ID in PlantcircBase osa_circ_022056
Alias Os_ciR4754
Organism Oryza sativa
Position chr3: 32066144-32068887  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0773600
Parent gene annotation Kinesin, motor region domain containing protein. (Os03t0773600-0
1);Hypothetical conserved gene. (Os03t0773600-02)
Parent gene strand +
Alternative splicing Os03g0773600_circ_g.1 Os03g0773600_circ_g.2 Os03g0773600_circ_g.3 Os03g0773600_circ_g.4 Os03g0773600_circ_g.5 Os03g0773600_circ_g.6 Os03g0773600_circ_g.8 Os03g0773600_circ_g.9 Os03g0773600_circ_g.10 Os03g0773600_circ_g.11 Os03g0773600_circ_g.12 Os03g0773600_circ_g.13 Os03g0773600_circ_g.14 Os03g0773600_circ_g.15 Os03g0773600_circ_g.16 Os03g0773600_circ_g.17 Os03g0773600_circ_g.18 Os03g0773600_circ_g.19 Os03g0773600_circ_g.20
Support reads 4/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0773600-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAACCAGTTCTTATGTTGTTTGTTGTCCTGTACAGAAAAACATTGGACATCTTGACACCCAT
GTTGAAGACTACAAAAGGATGATTGACAATCTCCAGgatgtatataagaatatatcttctacaa
ttgctggtgtagttcaaggccttaatgcgacagtctttgcttatggttctactggaaggtacat
gctcactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGTATATAAGAATATATCTTCTACAATTGCTGGTGTAGTTCAAGGCCTTAATGCGACAGTCT
TTGCTTATGGTTCTACTGGAAGGTACATGCTCACTGGATAGTTTTGTTGTTTGCAAGCATACTG
CCTGCTGCACATATTGCTATCATCACACATACTGCCGTAAATTTCTGAACCCTGAATTATCTCA
TTTGCTGCTATTGTTAGATATGGTTTACATTTGAAAAACTTGCTACACTCAGTTGGTATGATAT
GAAAGTGTTTCTTCAAATCAACCACATTATGTTTGCCTGATTTCCTCTTATGTTTTTTTCCTTT
GAGATGCCTAACTTAAAACTATTGTGAATTTGTGATATGTGATATATACTATATCTGCTGAGTT
CACCTCATGCCAATTGTAAACAAAATCATGATTATGTTTAGTCCATTGCCATTCTTGTTTTGTG
AAACTTAAATAAATGCTAAAACAAACTGAGACCATCCTACCTTTTCAGTAAACTTGAACTTTGG
TAAGAAAGGCTTCTTTAGTTTTTTTTTAATCATGACATAATATGAAAAATATGACTTAGCCACT
TTACGGAGCTTCCTTGGTGAAGCTATTATACTATTTGGGCAAGTTCATTTTTCCTTTTTATGGG
AATCCACGCTCATCATTGTGTCCATTAATAATGAAGTTTTACAAATACTTCAATACTGATCTAG
AAGCTGAAATGGCTCTTATTAGTATTACGCTTCATATGCATAATGTGAAATATTCTGTTATTTG
TGATTGTGCAGTGGGAAAACTTATACAATGGTTGGAACCCATAGTGATCCTGGTCTTATGGTTC
TGAGCTTTCGCACAATCTTTGATCTGGTAAAGAAGGATGACAGTAAAGATACGTTTGAGGTCTC
ATGTTCATATCTTGAAGTGTACAATGAGGTAATGTGCAATATATAGTTTCTTAAAAAAGTTAAC
TATTAGTCCTTAAATTCTCTATACTACATATAAACTTTCGTGAAAAAACTCTGTGCTTTCTGAA
TTCCAGGTTATCTATGATTTGCTTGAAAAATCGTCAGGTCACCTGGAGCTTCGTGAAGATCCTG
TGCATGGTATAATGGTTGCTGGTTTAAGAAGCATTAAGGTTTCTAGCTTCCTCTAATCTGTTTA
ATTTTTGTGATAATTAGAAAACAAATGCCTTGTAGTAATAGTGTCAATTCTGGCATTTTTTGTT
TTGTTTTCTTCATATTTTTTTGGCCATCCTAATGCTTGTAACCTCTTTTGTGCATATAATATCC
TCTCGTCATTGAGCCAATTAAGGAAGAGATGATTTTTAAGTTGCACTATTTAATTTATCTGCAT
GGTTTTTTTTTTGTCCTTTCTGGAAGAAATACTTGTAGATACCAACCCTTTCAGACTTCTTCAG
CTATTTATTCATCTTTTTTCTTTTAATGATTAGTTCATACAACCAATTTCTGCCCTTTGTAACA
ACAGCAAGTGGTCTACTGTGTTTGCATGCCATTCCTCATCATATTCGTAAAAATAGGCCTAGTC
AACATTCCATTCACCTCTACATATAAGAATATTTTGATGATCAATCTTTTATTTGCTTAGGTTC
ACTCAGCAGATAAGATTCTTGAACTCTTGAACATAGGCAACAGTCGGCGCAAGACAGAGAGCAC
AGAAGCAAACTCAACTTCTTCACGGTAATTACATATTGTGAATTTCCTTCTTTCCTTTCTGTAA
GTAGATGCTGTTATGGCCATTCAGCTTTTGAAGAATTTGTTGATATCTTGCTTAGCAAAACAAT
GCATTTCTATCTGTTTAATGAACTGCTATTTAAGGAGGATACTTAATATCTTAATCTGATGTAT
CACTGAGATTTTGTTTCTACGAAGACAGCTGCTGTAGGACGTAGTGCTGGACATCTTTACTACA
TTCTATTAATAAGATTTATCCTTTTTTTTTAAATCCAAGGTCACATGCTGTCCTGGAGATAACT
GTGAAGCGAAAACAAAAAGGACAATATGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTG
ACCTTGCGGGCAGGTAATACACTAATACCTACTCCTTTTTGGATTGTTTTTCTCATTTCACCCT
GCTAAGAAAGTAAGCTATAAAGCAACGCTTATATTATAACAGTGAGAGGGCCTCTGAAACAAAC
AACTTTGGGCAAAAGCTTAGAGATGGAGCCAACATTAACCGTTCACTTCTAGCGCTAGCGAACT
GCATCAATGCCCTTGGCAAGCAAAACAAGAAAGGTCTTGCATATGTTCCATATCGAAACAGGTA
TTTCCATTTTCAGGTGTATCATTCTGGAATCCATCGTTTTAAAAATCTTAGTTATATGACAATG
GTACTCTGCAGCAAATTAACACGAATCCTGAAGGATGGGCTCTCTGGTAACTCTCGTACTGTTA
TGGTTGCTACGATATCACCAGCTGATGATCAGTATCATCACACCACCAATACACTCAAGTATGC
TGATCGTGCAAAGGAGATAAAAACACATGTCCATGTAAGGGGCCATTTCTTTTAGTCTGCATAA
CAAATTACAAGATGCTGTGTCTATGTAGTCATCACTATTCTCACCCATGCAAAATATTTAATTG
GTTCTGAATCATAAATGTGAAAAAACCAGTTCTTATGTTGTTTGTTGTCCTGTACAGAAAAACA
TTGGACATCTTGACACCCATGTTGAAGACTACAAAAGGATGATTGACAATCTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.128585262
Functional Information
Coding potential Y
Potential coding position 32066940-32068884(+)
32066955-32068592(-)
Potential amino acid sequence MVGTHSDPGLMVLSFRTIFDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVH
GIMVAGLRSIKVHSADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQVL
RGKLALVDLAGSERASETNNFGQKLRDGANINRSLLALANCINALGKQNKKGLAYVPYRNSKLT
RILKDGLSGNSRTVMVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMI
DNLQDVYKNISSTIAGVVQGLNATVFAYGSTGSGKTYTMVGTHSDPGLMVLSFRTIFDLVKKDD
SKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVHGIMVAGLRSIKVHSADKILELLNIGN
SRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQVLRGKLALVDLAGSERASETNNFGQKLR
DGANINRSLLALANCINALGKQNKKGLAYVPYRNSKLTRILKDGLSGNSRTVMVATISPADDQY
HHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMIDNLQDVYKNISSTIAGVVQGLNATVF
AYGSTGSGKTYTMVGTHSDPGLMVLSFRTIFDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKS
SGHLELREDPVHGIMVAGLRSIKVHSADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVK
RKQKGQYGSQVLRGKLALVDLAGSERASETNNFGQKLRDGANINRSLLALANCINALGKQNKKG
LAYVPYRNSKLTRILKDGLSGNSRTVMVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGH
LDTHVEDYKRMIDNLQDVYKNISSTIAGVVQGLNATVFAYGSTGSGKTYTMVGTHSDPGLMVLS
FRTIFDLVKKDDSKDTFEVSCSYLEVYNEVIYDLLEKSSGHLELREDPVHGIMVAGLRSIKVHS
ADKILELLNIGNSRRKTESTEANSTSSRSHAVLEITVKRKQKGQYGSQVLRGKLALVDLAGSER
ASETNNFGQKLRDGANINRSLLALANCINALGKQNKKGLAYVPYRNSKLTRILKDGLSGNSRTV
MVATISPADDQYHHTTNTLKYADRAKEIKTHVHKNIGHLDTHVEDYKRMIDNLQ(+)
MGSNHCISFPTSSRTISKDCRIKALNYTSNCRRYILIYILEIVNHPFVVFNMGVKMSNVFMDMC
FYLLCTISILECIGGVMILIISW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017