Detail information of Os03g0773600_circ_g.20


General Information
CircRNA Name Os03g0773600_circ_g.20
ID in PlantcircBase osa_circ_022069
Alias NA
Organism Oryza sativa
Position chr3: 32069488-32069783  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0773600
Parent gene annotation Kinesin, motor region domain containing protein. (Os03t0773600-0
1);Hypothetical conserved gene. (Os03t0773600-02)
Parent gene strand +
Alternative splicing Os03g0773600_circ_g.1 Os03g0773600_circ_g.2 Os03g0773600_circ_g.3 Os03g0773600_circ_g.4 Os03g0773600_circ_g.5 Os03g0773600_circ_g.6 Os03g0773600_circ_g.7 Os03g0773600_circ_g.8 Os03g0773600_circ_g.9 Os03g0773600_circ_g.10 Os03g0773600_circ_g.11 Os03g0773600_circ_g.12 Os03g0773600_circ_g.13 Os03g0773600_circ_g.14 Os03g0773600_circ_g.15 Os03g0773600_circ_g.16 Os03g0773600_circ_g.17 Os03g0773600_circ_g.18 Os03g0773600_circ_g.19
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0773600-01:2
Os03t0773600-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGA
ACCTACCTCCACATTCTCAGTCAGTACAGACTTCTTgtgaaagataaggattcggctgttctgc
aagcattaacatcacggagacaagttattcttgacaacatacgcgacaatgatgaagctggtgc
tggctaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAAAGATAAGGATTCGGCTGTTCTGCAAGCATTAACATCACGGAGACAAGTTATTCTTGACA
ACATACGCGACAATGATGAAGCTGGTGCTGGCTACAGAAAGGTATTTGTAATATAAATTCGGAT
TGTCCTTTGTTTTTGGTTTCCTCAAAACAAACTTATATGGCAAACACTATGTAGGATATTGAAC
TGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAA
CAGAACCTACCTCCACATTCTCAGTCAGTACAGACTTCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.25734009
Functional Information
Coding potential Y
Potential coding position 32069713-32069780(+)
32069557-32069770(-)
Potential amino acid sequence MIEEATSNNGNRTYLHILSQYRLLVKDKDSAVLQALTSRRQVILDNIRDNDEAGAGYRKDIELN
ESRKRQLQDMIEEATSNNGNRTYLHILSQYRLLVKDKDSAVLQALTSRRQVILDNIRDNDEAGA
GYRKDIELNESRKRQLQDMIEEATSNNGNRTYLHILSQYRLLVKDKDSAVLQALTSRRQVILDN
IRDNDEAGAGYRKDIELNESRKRQLQDMIEEATSNNGNRTYLHILSQYRLL(+)
MLSRITCLRDVNACRTAESLSFTRSLY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017